Gene: FIRRE
Basic information
LNCipedia gene ID: FIRRE
Location (hg38): chrX:131689737-131830643
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA_gene
Transcripts: 22
Transcripts
Transcript ID | Location (hg38) | Length |
---|---|---|
FIRRE:1 | chrX:131702650-131830643 | 2928 bp |
FIRRE:10 | chrX:131755611-131830604 | 1398 bp |
FIRRE:11 | chrX:131701389-131830604 | 3948 bp |
FIRRE:12 | chrX:131701389-131830604 | 8415 bp |
FIRRE:13 | chrX:131711730-131830604 | 1568 bp |
FIRRE:14 | chrX:131784502-131830604 | 3185 bp |
FIRRE:15 | chrX:131702650-131830604 | 2889 bp |
FIRRE:16 | chrX:131749402-131794467 | 381 bp |
FIRRE:17 | chrX:131749304-131794467 | 628 bp |
FIRRE:18 | chrX:131755571-131794467 | 853 bp |
FIRRE:19 | chrX:131761935-131794467 | 515 bp |
FIRRE:2 | chrX:131711651-131830643 | 1662 bp |
FIRRE:20 | chrX:131749350-131794467 | 429 bp |
FIRRE:21 | chrX:131691530-131755666 | 1635 bp |
FIRRE:22 | chrX:131702652-131830643 | 2926 bp |
FIRRE:3 | chrX:131794271-131830643 | 2625 bp |
FIRRE:4 | chrX:131795657-131796167 | 511 bp |
FIRRE:5 | chrX:131756611-131785266 | 510 bp |
FIRRE:6 | chrX:131768567-131784015 | 259 bp |
FIRRE:7 | chrX:131689737-131755745 | 3137 bp |
FIRRE:8 | chrX:131743109-131755743 | 439 bp |
FIRRE:9 | chrX:131689902-131692853 | 524 bp |
Locus conservation
Locus conservation? | ||||
---|---|---|---|---|
FIRRE | no | no | no | no |
Available literature
- Hacisuleyman (2016), Function and evolution of local repeats in the Firre locus., Nat Commun
- Qiu (2015), Long non-coding RNA LINC01296 is a potential prognostic biomarker in patients with colorectal cancer., Tumour Biol.
- Yang (2015), The lncRNA Firre anchors the inactive X chromosome to the nucleolus by binding CTCF and maintains H3K27me3 methylation., Genome Biol.
- Chapman (2014), Differentially methylated CpG island within human XIST mediates alternative P2 transcription and YY1 binding., BMC Genet.
- Hacisuleyman (2014), Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre., Nat. Struct. Mol. Biol.
- Luco (2013), The non-coding genome: a universe in expansion for fine-tuning the coding world., Genome Biol.