Transcript: LINC00922:3

Basic information

LNCipedia transcript ID: LINC00922:3 
HGNC Gene Symbol: LINC00922    
HGNC Full Gene Name: long intergenic non-protein coding RNA 922
Ensembl Gene ID: ENSG00000261742
Ensembl Transcript ID: ENST00000564041
Location (hg38): chr16:65285024-65571789
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1243 bp
Exons: 10
Sources: Biogazelle lncRNA chip; Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000502378; TCONS_00024303; ENST00000564041.1; RP11-256I9.1-003; OTTHUMT00000420602.1; NONHSAT142981; ENST00000564041.5
Alternative gene names: ENSG00000250685; XLOC_011977; linc-CDH11-7; ENSG00000261742.1; RP11-256I9.1; OTTHUMG00000172812.2; LINC00922; ENSG00000261742.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -20.3097 non-coding 
CPAT coding probability 2.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00922:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDH11-2:3
3.1 lnc-CDH11-3:4
4.0 LINC00922:3
4.1 LINC00922:3
5.0 LINC00922:3
5.1 LINC00922:3
5.2 LINC00922:3