Transcript: lnc-GPBP1-1:2

Basic information

LNCipedia transcript ID: lnc-GPBP1-1:2 
LNCipedia gene ID: lnc-GPBP1-1
Location (hg38): chr5:57488912-57497003
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 394 bp
Exons: 3
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT101579; FPKM1_group_25405_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -93.7257 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPBP1-1:2 no no no no

Available literature

  1. Goedert (2016), RMEL3, a novel BRAFV600E-associated long noncoding RNA, is required for MAPK and PI3K signaling in melanoma., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GPBP1-1:2
4.0 lnc-GPBP1-1:2
4.1 lnc-GPBP1-1:2
5.0 lnc-GPBP1-1:2
5.1 lnc-GPBP1-11:2
5.2 lnc-GPBP1-1:2