Transcript: lnc-SLC39A11-1:4

Basic information

LNCipedia transcript ID: lnc-SLC39A11-1:4 
HGNC Gene Symbol: lnc-SLC39A11-1    
HGNC Full Gene Name: long intergenic non-protein coding RNA 511
Ensembl Gene ID: ENSG00000227036
Ensembl Transcript ID: ENST00000453722
Location (hg38): chr17:72384302-72592804
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1716 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000453722.2; LINC00511-002; OTTHUMT00000255287.2; NONHSAT055684; ENST00000453722.6
Alternative gene names: ENSG00000227036.2; LINC00511; OTTHUMG00000132227.4; ENSG00000227036.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.763 non-coding 
CPAT coding probability 18.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC39A11-1:4 no no no no

Available literature

  1. Schmidt (2016), The lncRNA SLNCR1 Mediates Melanoma Invasion through a Conserved SRA1-like Region., Cell Rep
  2. Sun (2016), Long Intergenic Noncoding RNA 00511 Acts as an Oncogene in Non-small-cell Lung Cancer by Binding to EZH2 and Suppressing p57., Mol Ther Nucleic Acids
  3. Zheng (2016), Pancreatic cancer risk variant in LINC00673 creates a miR-1231 binding site and interferes with PTPN11 degradation., Nat. Genet.
  4. Cabanski (2015), Pan-cancer transcriptome analysis reveals long noncoding RNAs with conserved function., RNA Biol
  5. Morán (2012), Human β cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes., Cell Metab.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC39A11-1:4
4.0 lnc-SLC39A11-1:4
4.1 lnc-SLC39A11-1:4
5.0 lnc-SLC39A11-1:4
5.1 lnc-GRB2-54:7
5.2 lnc-SLC39A11-1:4