REST API (Beta)
This REST API allows retrieval of basic lncRNA information from LNCipedia. Important: if a specific reference genome is prefered, this has to be be specified in the url. API endpoint:
https://lncipedia.org/api/
GET /api/transcript/:id
Retrieve information on one specific lncRNA transcript.
Parameters
- :id (required): A LNCipedia Transcript ID. eg:
Fields
- lncipediaTranscriptID: LNCipedia transcript ID. eg: 'lnc-A1BG-1:3'
- lncipediaGeneID: LNCipedia gene ID. eg: 'lnc-A1BG-1'
- chromosome: Chromosome. eg: 'chr10'
- strand: Strand '+' or '-'
- start: Start position
- end: End position
- exons: An array containing the start and end positions of the exons
- nrExons: Number of exons
- transcriptSize: Size of the transcript in nucleotides
- sequence: RNA sequence
- geneAliases: An array containing different aliases for the gene
- transcriptAliases: An array containing different aliases for the transcript
- class: Subclass. eg: 'intergenic'
- refGenome: The reference genome use. eg: 'hg38'
Example
Example request
GET https://lncipedia.org/api/transcript/HOTAIR:1
Example respons
{
"chromosome":"chr12",
"class":"antisense",
"end":53974956,
"exons":[
{
"end":53964124,
"start":53962308
},
{
"end":53964283,
"start":53964231
},
{
"end":53966087,
"start":53965964
},
{
"end":53966377,
"start":53966276
},
{
"end":53967394,
"start":53967269
},
{
"end":53968756,
"start":53968617
},
{
"end":53974956,
"start":53974898
}
],
"geneAliases":[
"ENSG00000228630",
"HOTAIR",
"ENSG00000228630.1",
"OTTHUMG00000152934.1",
"ENSG00000228630.5",
"HOXC-AS4",
"HOXC11-AS1",
"NCRNA00072"
],
"lncipediaGeneID":"HOTAIR",
"lncipediaTranscriptID":"HOTAIR:1",
"nrExons":7,
"refGenome":"hg38",
"sequence":"CCAGTTCTCAGGCGAGAGCCGCGGCTGACAGGGTCTGGGACAGAAGGAAAGCCCTCCAGCCTCCAGGCCCTGCCTTCTGCCTGCACATTCTGCCCTGATTTCCGGAACCTGGAAGCCTAGGCAGGCAGTGGGGAACTCTGACTCGCCTGTGCTCTGGAGCTTGATCCGAAAGCTTCCACAGTGAGGACTGCTCCGTGGGGGTAAGAGAGCACCAGGCACTGAGGCCTGGGAGTTCCACAGACCAACACCCCTGCTCCTGGCGGCTCCCACCCGGGACTTAGACCCTCAGGTCCCTAATATCCCGGAGGTGCTCTCAATCAGAAAGGTCCTGCTCCGCTTCGCAGTGGAATGGAACGGATTTAGAAGCCTGCAGTAGGGGAGTGGGGAGTGGAGAGAGGGAGCCCAGAGTTACAGACGGCGGCGAGAGGAAGGAGGGGCGTCTTTATTTTTTTAAGGCCCCAAAGAGTCTGATGTTTACAAGACCAGAAATGCCACGGCCGCGTCCTGGCAGAGAAAAGGCTGAAATGGAGGACCGGCGCCTTCCTTATAAGTATGCACATTGGCGAGAGAAGTGCTGCAACCTAAACCAGCAATTACACCCAAGCTCGTTGGGGCCTAAGCCAGTACCGACCTGGTAGAAAAAGCAACCACGAAGCTAGAGAGAGAGCCAGAGGAGGGAAGAGAGCGCCAGACGAAGGTGAAAGCGAACCACGCAGAGAAATGCAGGCAAGGGAGCAAGGCGGCAGTTCCCGGAACAAACGTGGCAGAGGGCAAGACGGGCACTCACAGACAGAGGTTTATGTATTTTTATTTTTTAAAATCTGATTTGGTGTTCCATGAGGAAAAGGGAAAATCTAGGGAACGGGAGTACAGAGAGAATAATCCGGGTCCTAGCTCGCCACATGAACGCCCAGAGAACGCTGGAAAAACCTGAGCGGGTGCCGGGGCAGCACCCGGCTCGGGTCAGCCACTGCCCCACACCGGGCCCACCAAGCCCCGCCCCTCGCGGCCACCGGGGCTTCCTTGCTCTTCTTATCATCTCCATCTTTATGATGAGGCTTGTTAACAAGACCAGAGAGCTGGCCAAGCACCTCTATCTCAGCCGCGCCCGCTCAGCCGAGCAGCGGTCGGTGGGGGGACTGGGAGGCGCTAATTAATTGATTCCTTTGGACTGTAAAATATGGCGGCGTCTACACGGAACCCATGGACTCATAAACAATATATCTGTTGGGCGTGAGTGCACTGTCTCTCAAATAATTTTTCCATAGGCAAATGTCAGAGGGTTCTGGATTTTTAGTTGCTAAGGAAAGATCCAAATGGGACCAATTTTAGGAGGCCCAAACAGAGTCCGTTCAGTGTCAGAAAATGCTTCCCCAAAGGGGTTGGGAGTGTGTTTTGTTGGAAAAAAGCTTGGGTTATAGGAAAGCCTTTCCCTGCTACTTGTGTAGACCCAGCCCAATTTAAGAATTACAAGGAAGCGAAGGGGTTGTGTAGGCCGGAAGCCTCTCTGTCCCGGCTGGATGCAGGGGACTTGAGCTGCTCCGGAATTTGAGAGGAACATAGAAGCAAAGGTCCAGCCTTTGCTTCGTGCTGATTCCTAGACTTAAGATTCAAAAACAAATTTTTAAAAGTGAAACCAGCCCTAGCCTTTGGAAGCTCTTGAAGGTTCAGCACCCACCCAGGAATCCACCTGCCTGTTACACGCCTCTCCAAGACACAGTGGCACCGCTTTTCTAACTGGCAGCACAGAGCAACTCTATAATATGCTTATATTAGGTCTAGAAGAATGCATCTTGAGACACATGGGTAACCTAATTATATAATGCTTGTTCCATACAGGAGTGATTATGCAGTGGGACCCTGCTGCAAACGGGACTTTGCACTCTAAATATAGACCCCAGCTTGGGACAAAAGTTGCAGTAGAAAAATAGACATAGGAGAACACTTAAATAAGTGATGCATGTAGACACAGAAGGGGTATTTAAAAGACAGAAATAATAGAAGTACAGAAGAACAGAAAAAAAATCAGCAGATGGAGATTACCATTCCCAATGCCTGAACTTCCTCCTGCTATTAAGATTGCTAGAGAATTGTGTCTTAAACAGTTCATGAACCCAGAAGAATGCAATTTCAATGTATTTAGTACACACACAGTATGTATATAAACACAACTCACAGAATATATTTTCCATACATTGGGTAGGTATGCACTTTGTGTATATATAATAATGTATTTTCCATGCAGTTTTAAAATGTAGATATATTAATATCTGGATGCATTTTCTGTGCACTGGTTTTATATGCCTTATGGAGTATATACTCACATGTAGCTAAATAGACTCAGGACTGCACATTCCTTGTGTAGGTTGTGTGTGTGTGGTGGTTTTATGCATAAATAAAGTTTTACATGTGGTGAATATA",
"start":53962308,
"strand":"-",
"transcriptAliases":[
"ENST00000424518",
"ENST00000424518.1",
"HOTAIR-001",
"OTTHUMT00000328662.1",
"NONHSAT028510",
"ENST00000424518.5"
],
"transcriptSize":2421
}
GET /api/gene/:id
Retrieve information on one specific lncRNA gene.
Parameters
- :id (required): A LNCipedia Gene ID. eg:
Fields
- lncipediaGeneID: LNCipedia gene ID. eg: 'lnc-A1BG-1'
- chromosome: Chromosome. eg: 'chr10'
- strand: Strand '+' or '-'
- start: Start position
- end: End position
- nrTranscripts: Number of transcripts
- transcripts: An array containing the LNCipedia transcript IDs and start and end positions of the transcripts
- refGenome: The reference genome use. eg: 'hg38'
Example
Example request:
GET https://lncipedia.org/api/gene/HOTAIR
Example respons:
{
"chromosome": "chr12",
"end": 53974956,
"lncipediaGeneID": "HOTAIR",
"nrTranscripts": 11,
"refGenome": "hg38",
"start": 53962308,
"strand": "-",
"transcripts": [
{
"end": 53974956,
"lncipediaTranscriptID": "HOTAIR:1",
"start": 53962308
},
{
"end": 53966630,
"lncipediaTranscriptID": "HOTAIR:10",
"start": 53963802
},
{
"end": 53966193,
"lncipediaTranscriptID": "HOTAIR:11",
"start": 53962626
},
{
"end": 53974956,
"lncipediaTranscriptID": "HOTAIR:2",
"start": 53962308
},
{
"end": 53974947,
"lncipediaTranscriptID": "HOTAIR:3",
"start": 53963749
},
{
"end": 53968914,
"lncipediaTranscriptID": "HOTAIR:4",
"start": 53964085
},
{
"end": 53968914,
"lncipediaTranscriptID": "HOTAIR:5",
"start": 53962308
},
{
"end": 53968763,
"lncipediaTranscriptID": "HOTAIR:6",
"start": 53962626
},
{
"end": 53968756,
"lncipediaTranscriptID": "HOTAIR:7",
"start": 53962308
},
{
"end": 53968244,
"lncipediaTranscriptID": "HOTAIR:8",
"start": 53962314
},
{
"end": 53967355,
"lncipediaTranscriptID": "HOTAIR:9",
"start": 53963901
}
]
}
GET /api/search
Search the LNCipedia database for lncRNA transcripts. If a specific chromosomal location is specified, all lncRNAs overlapping with that region (full or partial) are returned. A maximum of 20 records can be retrieved per request. Using the page parameter, one can traverse over all results. Page 0 is the first page and includes the 20 first results, page 1 includes results 21 to 40 etc. The nextPage field holds the URL to conveniently retrieve the next 20 results. When it is absent, no more results are available.
Parameters
- id (optional): Any lncRNA identifier, internal or external. eg: 'ENSG00000228630'
- chromosome (optional): Chromosome. eg: 'chr10'
- start (optional): Start of region
- end (optional): End of region
- high_confidence_set (optional): Only retrieve lncRNAs in the high-confidence set. Default: false, set to 1 to enable
- keyword (optional): A keyword in an abstract associated with the lncRNA. eg: 'cancer'
- class (optional): Subclass. eg: 'intergenic'
- page (optional): Specify the set of results to retrieve. Default is 0 and this corresponds to the 20 first results.
Fields
- count: Total number of records found in the search
- page: Zero based paginator
- nextPage: URL to retrieve the next set of results
- pages: Total number of pages with records available for this search
- transcripts: An array containing the lncRNA transcripts, see GET /api/transcript/:id for a full description of the fields
- refGenome: The reference genome use. eg: 'hg38'
Example
Example request:
GET https://lncipedia.org/api/search?id=ENSG00000228630
Example respons:
{
"count": 5,
"page": 0,
"pages": 1,
"refGenome": "hg38",
"transcripts": [
{
"chromosome": "chr12",
"class": "intergenic",
"end": 53968914,
"exons": [
{
"end": 53964124,
"start": 53964085
},
{
"end": 53966083,
"start": 53965964
},
{
"end": 53966377,
"start": 53966276
},
{
"end": 53968914,
"start": 53968617
}
],
"geneAliases": [
"ENSG00000228630",
"HOTAIR",
"ENSG00000228630.1",
"OTTHUMG00000152934.1",
"ENSG00000228630.5",
"HOXC-AS4",
"HOXC11-AS1",
"NCRNA00072"
],
"lncipediaGeneID": "HOTAIR",
"lncipediaTranscriptID": "HOTAIR:4",
"nrExons": 4,
"sequence": "CTAATCAATCCAAAAGGAAAAAGAAAAGAGAGGGGTGGGAAGGCATGGGGTGAAAAACTTCAGGTGACACAAAGCAAAAAGATTCCAGTCACCAAAAACAAAAACAAAAAAAAATCTTTTGCCCCCAGCAAGAATCATTTGTTTGGGATCTGTTCCAGCCTCCAGGCCCTGCCTTCTGCCTGCACATTCTGCCCTGATTTCCGGAACCTGGAAGCCTAGGCAGGCAGTGGGGAACTCTGACTCGCCTGTGCTCTGGAGCTTGATCCGAAAGCTTCCACAGTGAGGACTGCTCCGTGGGGTCCTGCTCCGCTTCGCAGTGGAATGGAACGGATTTAGAAGCCTGCAGTAGGGGAGTGGGGAGTGGAGAGAGGGAGCCCAGAGTTACAGACGGCGGCGAGAGGAGGGGCGTCTTTATTTTTTTAAGGCCCCAAAGAGTCTGATGTTTACAAGACCAGAAATGCCACGGCCGCGTCCTGGCAGAGAAAAGGCTGAAATGGAGGACCGGCGCCTTCCTTATAAGCTCGTTGGGGCCTAAGCCAGTACCGACCTGGTAGAAAAAG",
"start": 53964085,
"strand": "-",
"transcriptAliases": [
"ENST00000439545",
"ENST00000439545.1",
"HOTAIR-003",
"OTTHUMT00000328664.1"
],
"transcriptSize": 560
},
{
"chromosome": "chr12",
"class": "antisense",
"end": 53974947,
"exons": [
{
"end": 53964124,
"start": 53963749
},
{
"end": 53966087,
"start": 53965964
},
{
"end": 53966377,
"start": 53966276
},
{
"end": 53967394,
"start": 53967269
},
{
"end": 53968756,
"start": 53968617
},
{
"end": 53974947,
"start": 53974898
}
],
"geneAliases": [
"ENSG00000228630",
"HOTAIR",
"ENSG00000228630.1",
"OTTHUMG00000152934.1",
"ENSG00000228630.5",
"HOXC-AS4",
"HOXC11-AS1",
"NCRNA00072"
],
"lncipediaGeneID": "HOTAIR",
"lncipediaTranscriptID": "HOTAIR:3",
"nrExons": 6,
"sequence": "AGGCGAGAGCCGCGGCTGACAGGGTCTGGGACAGAAGGAAAGCCCTCCAGCCTCCAGGCCCTGCCTTCTGCCTGCACATTCTGCCCTGATTTCCGGAACCTGGAAGCCTAGGCAGGCAGTGGGGAACTCTGACTCGCCTGTGCTCTGGAGCTTGATCCGAAAGCTTCCACAGTGAGGACTGCTCCGTGGGGGTAAGAGAGCACCAGGCACTGAGGCCTGGGAGTTCCACAGACCAACACCCCTGCTCCTGGCGGCTCCCACCCGGGACTTAGACCCTCAGGTCCCTAATATCCCGGAGGTGCTCTCAATCAGAAAGGTCCTGCTCCGCTTCGCAGTGGAATGGAACGGATTTAGAAGCCTGCAGTAGGGGAGTGGGGAGTGGAGAGAGGGAGCCCAGAGTTACAGACGGCGGCGAGAGGAAGGAGGGGCGTCTTTATTTTTTTAAGGCCCCAAAGAGTCTGATGTTTACAAGACCAGAAATGCCACGGCCGCGTCCTGGCAGAGAAAAGGCTGAAATGGAGGACCGGCGCCTTCCTTATAAGCTCGTTGGGGCCTAAGCCAGTACCGACCTGGTAGAAAAAGCAACCACGAAGCTAGAGAGAGAGCCAGAGGAGGGAAGAGAGCGCCAGACGAAGGTGAAAGCGAACCACGCAGAGAAATGCAGGCAAGGGAGCAAGGCGGCAGTTCCCGGAACAAACGTGGCAGAGGGCAAGACGGGCACTCACAGACAGAGGTTTATGTATTTTTATTTTTTAAAATCTGATTTGGTGTTCCATGAGGAAAAGGGAAAATCTAGGGAACGGGAGTACAGAGAGAATAATCCGGGTCCTAGCTCGCCACATGAACGCCCAGAGAACGCTGGAAAAACCTGAGCGGGTGCCGGGGCAGCACCCGGCTCGGGTCAGCCACTGCCCCACA",
"start": 53963749,
"strand": "-",
"transcriptAliases": [
"ENST00000455246",
"ENST00000455246.1",
"HOTAIR-002",
"OTTHUMT00000328663.1",
"ENST00000455246.5"
],
"transcriptSize": 918
},
{
"chromosome": "chr12",
"class": "intergenic",
"end": 53966630,
"exons": [
{
"end": 53964124,
"start": 53963802
},
{
"end": 53966087,
"start": 53965964
},
{
"end": 53966377,
"start": 53966276
},
{
"end": 53966630,
"start": 53966608
}
],
"geneAliases": [
"ENSG00000228630",
"HOTAIR",
"ENSG00000228630.1",
"OTTHUMG00000152934.1",
"ENSG00000228630.5",
"HOXC-AS4",
"HOXC11-AS1",
"NCRNA00072"
],
"lncipediaGeneID": "HOTAIR",
"lncipediaTranscriptID": "HOTAIR:10",
"nrExons": 4,
"sequence": "ATCTTTCTTTGCTAGCTGCCCGGGTCCTGCTCCGCTTCGCAGTGGAATGGAACGGATTTAGAAGCCTGCAGTAGGGGAGTGGGGAGTGGAGAGAGGGAGCCCAGAGTTACAGACGGCGGCGAGAGGAAGGAGGGGCGTCTTTATTTTTTTAAGGCCCCAAAGAGTCTGATGTTTACAAGACCAGAAATGCCACGGCCGCGTCCTGGCAGAGAAAAGGCTGAAATGGAGGACCGGCGCCTTCCTTATAAGCTCGTTGGGGCCTAAGCCAGTACCGACCTGGTAGAAAAAGCAACCACGAAGCTAGAGAGAGAGCCAGAGGAGGGAAGAGAGCGCCAGACGAAGGTGAAAGCGAACCACGCAGAGAAATGCAGGCAAGGGAGCAAGGCGGCAGTTCCCGGAACAAACGTGGCAGAGGGCAAGACGGGCACTCACAGACAGAGGTTTATGTATTTTTATTTTTTAAAATCTGATTTGGTGTTCCATGAGGAAAAGGGAAAATCTAGGGAACGGGAGTACAGAGAGAATAATCCGGGTCCTAGCTCGCCACATGAACGCCCAGAGAACGCTGGAAA",
"start": 53963802,
"strand": "-",
"transcriptAliases": [
"ENST00000425595",
"ENST00000425595.1",
"HOTAIR-005",
"OTTHUMT00000328666.1",
"NONHSAT028513",
"ENST00000425595.5"
],
"transcriptSize": 572
},
{
"chromosome": "chr12",
"class": "antisense",
"end": 53974956,
"exons": [
{
"end": 53964124,
"start": 53962308
},
{
"end": 53964283,
"start": 53964231
},
{
"end": 53966087,
"start": 53965964
},
{
"end": 53966377,
"start": 53966276
},
{
"end": 53967394,
"start": 53967269
},
{
"end": 53968756,
"start": 53968617
},
{
"end": 53974956,
"start": 53974898
}
],
"geneAliases": [
"ENSG00000228630",
"HOTAIR",
"ENSG00000228630.1",
"OTTHUMG00000152934.1",
"ENSG00000228630.5",
"HOXC-AS4",
"HOXC11-AS1",
"NCRNA00072"
],
"lncipediaGeneID": "HOTAIR",
"lncipediaTranscriptID": "HOTAIR:1",
"nrExons": 7,
"sequence": "CCAGTTCTCAGGCGAGAGCCGCGGCTGACAGGGTCTGGGACAGAAGGAAAGCCCTCCAGCCTCCAGGCCCTGCCTTCTGCCTGCACATTCTGCCCTGATTTCCGGAACCTGGAAGCCTAGGCAGGCAGTGGGGAACTCTGACTCGCCTGTGCTCTGGAGCTTGATCCGAAAGCTTCCACAGTGAGGACTGCTCCGTGGGGGTAAGAGAGCACCAGGCACTGAGGCCTGGGAGTTCCACAGACCAACACCCCTGCTCCTGGCGGCTCCCACCCGGGACTTAGACCCTCAGGTCCCTAATATCCCGGAGGTGCTCTCAATCAGAAAGGTCCTGCTCCGCTTCGCAGTGGAATGGAACGGATTTAGAAGCCTGCAGTAGGGGAGTGGGGAGTGGAGAGAGGGAGCCCAGAGTTACAGACGGCGGCGAGAGGAAGGAGGGGCGTCTTTATTTTTTTAAGGCCCCAAAGAGTCTGATGTTTACAAGACCAGAAATGCCACGGCCGCGTCCTGGCAGAGAAAAGGCTGAAATGGAGGACCGGCGCCTTCCTTATAAGTATGCACATTGGCGAGAGAAGTGCTGCAACCTAAACCAGCAATTACACCCAAGCTCGTTGGGGCCTAAGCCAGTACCGACCTGGTAGAAAAAGCAACCACGAAGCTAGAGAGAGAGCCAGAGGAGGGAAGAGAGCGCCAGACGAAGGTGAAAGCGAACCACGCAGAGAAATGCAGGCAAGGGAGCAAGGCGGCAGTTCCCGGAACAAACGTGGCAGAGGGCAAGACGGGCACTCACAGACAGAGGTTTATGTATTTTTATTTTTTAAAATCTGATTTGGTGTTCCATGAGGAAAAGGGAAAATCTAGGGAACGGGAGTACAGAGAGAATAATCCGGGTCCTAGCTCGCCACATGAACGCCCAGAGAACGCTGGAAAAACCTGAGCGGGTGCCGGGGCAGCACCCGGCTCGGGTCAGCCACTGCCCCACACCGGGCCCACCAAGCCCCGCCCCTCGCGGCCACCGGGGCTTCCTTGCTCTTCTTATCATCTCCATCTTTATGATGAGGCTTGTTAACAAGACCAGAGAGCTGGCCAAGCACCTCTATCTCAGCCGCGCCCGCTCAGCCGAGCAGCGGTCGGTGGGGGGACTGGGAGGCGCTAATTAATTGATTCCTTTGGACTGTAAAATATGGCGGCGTCTACACGGAACCCATGGACTCATAAACAATATATCTGTTGGGCGTGAGTGCACTGTCTCTCAAATAATTTTTCCATAGGCAAATGTCAGAGGGTTCTGGATTTTTAGTTGCTAAGGAAAGATCCAAATGGGACCAATTTTAGGAGGCCCAAACAGAGTCCGTTCAGTGTCAGAAAATGCTTCCCCAAAGGGGTTGGGAGTGTGTTTTGTTGGAAAAAAGCTTGGGTTATAGGAAAGCCTTTCCCTGCTACTTGTGTAGACCCAGCCCAATTTAAGAATTACAAGGAAGCGAAGGGGTTGTGTAGGCCGGAAGCCTCTCTGTCCCGGCTGGATGCAGGGGACTTGAGCTGCTCCGGAATTTGAGAGGAACATAGAAGCAAAGGTCCAGCCTTTGCTTCGTGCTGATTCCTAGACTTAAGATTCAAAAACAAATTTTTAAAAGTGAAACCAGCCCTAGCCTTTGGAAGCTCTTGAAGGTTCAGCACCCACCCAGGAATCCACCTGCCTGTTACACGCCTCTCCAAGACACAGTGGCACCGCTTTTCTAACTGGCAGCACAGAGCAACTCTATAATATGCTTATATTAGGTCTAGAAGAATGCATCTTGAGACACATGGGTAACCTAATTATATAATGCTTGTTCCATACAGGAGTGATTATGCAGTGGGACCCTGCTGCAAACGGGACTTTGCACTCTAAATATAGACCCCAGCTTGGGACAAAAGTTGCAGTAGAAAAATAGACATAGGAGAACACTTAAATAAGTGATGCATGTAGACACAGAAGGGGTATTTAAAAGACAGAAATAATAGAAGTACAGAAGAACAGAAAAAAAATCAGCAGATGGAGATTACCATTCCCAATGCCTGAACTTCCTCCTGCTATTAAGATTGCTAGAGAATTGTGTCTTAAACAGTTCATGAACCCAGAAGAATGCAATTTCAATGTATTTAGTACACACACAGTATGTATATAAACACAACTCACAGAATATATTTTCCATACATTGGGTAGGTATGCACTTTGTGTATATATAATAATGTATTTTCCATGCAGTTTTAAAATGTAGATATATTAATATCTGGATGCATTTTCTGTGCACTGGTTTTATATGCCTTATGGAGTATATACTCACATGTAGCTAAATAGACTCAGGACTGCACATTCCTTGTGTAGGTTGTGTGTGTGTGGTGGTTTTATGCATAAATAAAGTTTTACATGTGGTGAATATA",
"start": 53962308,
"strand": "-",
"transcriptAliases": [
"ENST00000424518",
"ENST00000424518.1",
"HOTAIR-001",
"OTTHUMT00000328662.1",
"NONHSAT028510",
"ENST00000424518.5"
],
"transcriptSize": 2421
},
{
"chromosome": "chr12",
"class": "intergenic",
"end": 53967355,
"exons": [
{
"end": 53964124,
"start": 53963901
},
{
"end": 53964283,
"start": 53964231
},
{
"end": 53966059,
"start": 53965964
},
{
"end": 53966377,
"start": 53966276
},
{
"end": 53967355,
"start": 53967269
}
],
"geneAliases": [
"ENSG00000228630",
"HOTAIR",
"ENSG00000228630.1",
"OTTHUMG00000152934.1",
"ENSG00000228630.5",
"HOXC-AS4",
"HOXC11-AS1",
"NCRNA00072"
],
"lncipediaGeneID": "HOTAIR",
"lncipediaTranscriptID": "HOTAIR:9",
"nrExons": 5,
"sequence": "AGACCAACACCCCTGCTCCTGGCGGCTCCCACCCGGGACTTAGACCCTCAGGTCCCTAATATCCCGGAGGTGCTCTCAATCAGAAAGGTCCTGCTCCGCTTCGCAGTGGAATGGAACGGATTTAGAAGCCTGCAGTAGGGGAGTGGGGAGTGGAGAGAGGGAGCCCAGAGTTACAGACGGCGGCGAGAGGCCCCAAAGAGTCTGATGTTTACAAGACCAGAAATGCCACGGCCGCGTCCTGGCAGAGAAAAGGCTGAAATGGAGGACCGGCGCCTTCCTTATAAGTATGCACATTGGCGAGAGAAGTGCTGCAACCTAAACCAGCAATTACACCCAAGCTCGTTGGGGCCTAAGCCAGTACCGACCTGGTAGAAAAAGCAACCACGAAGCTAGAGAGAGAGCCAGAGGAGGGAAGAGAGCGCCAGACGAAGGTGAAAGCGAACCACGCAGAGAAATGCAGGCAAGGGAGCAAGGCGGCAGTTCCCGGAACAAACGTGGCAGAGGGCAAGACGGGCACTCACAGACAGAGGTTTATGTATTTTTATTTTTTAAAATCTGATTT",
"start": 53963901,
"strand": "-",
"transcriptAliases": [
"ENST00000453875",
"ENST00000453875.1",
"HOTAIR-004",
"OTTHUMT00000328665.1",
"NONHSAT028514",
"ENST00000453875.5"
],
"transcriptSize": 562
}
]
}