Transcript: LINC01883:9

Basic information

LNCipedia transcript ID: LINC01883:9 
HGNC Gene Symbol: LINC01883    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1883
Ensembl Gene ID: ENSG00000235009
Ensembl Transcript ID: ENST00000457385
Location (hg19): chr2:38658436-38660715
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 380 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002875; ENST00000457385; ENST00000457385.1; AC093822.1-001; OTTHUMT00000331179.1
Alternative gene names: XLOC_001436; linc-GALM-1; ENSG00000235009; AC093822.1; ENSG00000235009.1; OTTHUMG00000153433.1; LINC01883


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -54.0623 non-coding 
CPAT coding probability 5.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01883:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GALM-1:2
3.1 lnc-GALM-2:2
4.0 lnc-GALM-2:2
4.1 lnc-GALM-2:2
5.0 lnc-GALM-2:2
5.1 LINC01883:5
5.2 LINC01883:9