Transcript: lnc-CYP7B1-2:1

Basic information

LNCipedia transcript ID: lnc-CYP7B1-2:1 
LNCipedia gene ID: lnc-CYP7B1-2
Ensembl Gene ID: ENSG00000254102
Ensembl Transcript ID: ENST00000517909
Location (hg19): chr8:65486868-65494445
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2489 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000517909; ENST00000517909.1; RP11-21C4.1-001; OTTHUMT00000378548.1; NONHSAT126968
Alternative gene names: ENSG00000254102; RP11-21C4.1; ENSG00000254102.1; OTTHUMG00000164385.1; AC090136.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.6896 non-coding 
CPAT coding probability 36.44% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CYP7B1-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CYP7B1-2:1
3.1 lnc-CYP7B1-2:1
4.0 lnc-CYP7B1-2:1
4.1 lnc-CYP7B1-2:1
5.0 lnc-CYP7B1-2:1
5.1 lnc-CPA6-58:1
5.2 lnc-CYP7B1-2:1