Transcript: lnc-FAM172A-3:5

Basic information

LNCipedia transcript ID: lnc-FAM172A-3:5 
LNCipedia gene ID: lnc-FAM172A-3
Location (hg19): chr5:92426069-92498193
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 606 bp
Exons: 6
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000251361.1|MICT00000286029.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -175.5337 non-coding 
CPAT coding probability 0.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM172A-3:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-FAM172A-3:5
5.0 lnc-FAM172A-3:5
5.1 lnc-ANKRD34B-180:4
5.2 lnc-FAM172A-3:5