Transcript: lnc-PFKP-16:11

Basic information

LNCipedia transcript ID: lnc-PFKP-16:11 
LNCipedia gene ID: lnc-PFKP-16
Location (hg19): chr10:3976711-3978004
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 590 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000432452; ENST00000432452.1; RP11-464C19.3-001; OTTHUMT00000046502.1
Alternative gene names: ENSG00000226005; RP11-464C19.3; ENSG00000226005.1; OTTHUMG00000017569.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -17.8852 non-coding 
CPAT coding probability 1.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PFKP-16:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PFKP-14:2
3.1 lnc-PFKP-15:2
4.0 lnc-PFKP-16:11
4.1 lnc-PFKP-16:11
5.0 lnc-PFKP-16:11
5.1 lnc-NPY4R2-502:13
5.2 lnc-PFKP-16:11