Transcript: lnc-PFKP-16:2

Basic information

LNCipedia transcript ID: lnc-PFKP-16:2 
LNCipedia gene ID: lnc-PFKP-16
Location (hg19): chr10:3988245-4006403
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 834 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00018090; NONHSAT011069
Alternative gene names: XLOC_008357; linc-AKR1E2-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -197.8891 non-coding 
CPAT coding probability 1.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PFKP-16:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PFKP-15:2
3.1 lnc-PFKP-16:2
4.0 lnc-PFKP-16:2
4.1 lnc-PFKP-16:2
5.0 lnc-PFKP-16:2
5.1 lnc-NPY4R2-502:21
5.2 lnc-PFKP-16:2