Transcript: lnc-PFKP-16:8

Basic information

LNCipedia transcript ID: lnc-PFKP-16:8 
LNCipedia gene ID: lnc-PFKP-16
Location (hg19): chr10:3975161-3981117
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 643 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: l_237_chr10:3975160-3981117_prostate
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.4584 non-coding 
CPAT coding probability 5.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PFKP-16:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PFKP-16:8
4.0 lnc-PFKP-16:8
4.1 lnc-PFKP-16:8
5.0 lnc-PFKP-16:8
5.1 lnc-NPY4R2-502:12
5.2 lnc-PFKP-16:8