Transcript: lnc-SPATA31E1-9:1

Basic information

LNCipedia transcript ID: lnc-SPATA31E1-9:1 
LNCipedia gene ID: lnc-SPATA31E1-9
Location (hg19): chr9:90728649-90734782
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 477 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT132908
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 26.3533 non-coding 
CPAT coding probability 11.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SPATA31E1-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C9orf79-9:1
4.0 lnc-C9orf79-9:1
4.1 lnc-C9orf79-9:1
5.0 lnc-C9orf79-9:1
5.1 lnc-SECISBP2-23:1
5.2 lnc-SPATA31E1-9:1