Transcript: lnc-STAP1-13:3

Basic information

LNCipedia transcript ID: lnc-STAP1-13:3 
LNCipedia gene ID: lnc-STAP1-13
Ensembl Gene ID: ENSG00000272304
Ensembl Transcript ID: ENST00000513540
Location (hg19): chr4:66868999-66882510
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 552 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007547; ENST00000513540.1; RP11-25H12.1-002; OTTHUMT00000361860.1; NONHSAT096675
Alternative gene names: XLOC_003562; linc-STAP1-2; ENSG00000249413.1; RP11-25H12.1; OTTHUMG00000160711.1; ENSG00000272304.1; RP11-19C24.1; AC096721.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -259.6018 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-STAP1-13:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-STAP1-2:2
3.1 lnc-STAP1-1:2
4.0 lnc-STAP1-13:3
4.1 lnc-STAP1-13:3
5.0 lnc-STAP1-13:3
5.1 lnc-CEP135-85:3
5.2 lnc-STAP1-13:3