Gene: SNHG1
Basic information
LNCipedia gene ID: SNHG1
Location (hg38): chr11:62851874-62856011
Strand: -
Class: bidirectional
Sequence Ontology term: bidirectional_promoter_lncRNA
Transcripts: 64
Transcripts
Transcript ID | Location (hg38) | Length |
---|---|---|
SNHG1:1 | chr11:62851938-62856011 | 3284 bp |
SNHG1:10 | chr11:62851988-62855867 | 1487 bp |
SNHG1:11 | chr11:62854080-62855812 | 996 bp |
SNHG1:12 | chr11:62854682-62855758 | 870 bp |
SNHG1:13 | chr11:62851988-62855746 | 1374 bp |
SNHG1:14 | chr11:62852290-62855488 | 748 bp |
SNHG1:15 | chr11:62854442-62855488 | 646 bp |
SNHG1:16 | chr11:62852297-62855488 | 588 bp |
SNHG1:17 | chr11:62854680-62855488 | 594 bp |
SNHG1:18 | chr11:62852252-62855488 | 754 bp |
SNHG1:19 | chr11:62854368-62855488 | 578 bp |
SNHG1:2 | chr11:62852258-62855914 | 780 bp |
SNHG1:20 | chr11:62852832-62855488 | 636 bp |
SNHG1:21 | chr11:62853073-62855488 | 784 bp |
SNHG1:22 | chr11:62853354-62855488 | 550 bp |
SNHG1:23 | chr11:62853547-62855479 | 532 bp |
SNHG1:24 | chr11:62852609-62855467 | 347 bp |
SNHG1:25 | chr11:62851989-62855466 | 2001 bp |
SNHG1:26 | chr11:62852749-62855460 | 610 bp |
SNHG1:27 | chr11:62851991-62855460 | 1038 bp |
SNHG1:28 | chr11:62851988-62855236 | 1071 bp |
SNHG1:29 | chr11:62852020-62855236 | 955 bp |
SNHG1:3 | chr11:62851988-62855888 | 1118 bp |
SNHG1:30 | chr11:62853573-62855174 | 240 bp |
SNHG1:31 | chr11:62853072-62854342 | 625 bp |
SNHG1:32 | chr11:62852048-62853696 | 849 bp |
SNHG1:33 | chr11:62851874-62855885 | 2740 bp |
SNHG1:34 | chr11:62851874-62855885 | 2463 bp |
SNHG1:35 | chr11:62851986-62855885 | 1066 bp |
SNHG1:36 | chr11:62851988-62855885 | 633 bp |
SNHG1:37 | chr11:62851988-62855885 | 1505 bp |
SNHG1:38 | chr11:62851988-62855885 | 1513 bp |
SNHG1:39 | chr11:62852258-62855885 | 751 bp |
SNHG1:4 | chr11:62851989-62855885 | 2768 bp |
SNHG1:40 | chr11:62854682-62855885 | 997 bp |
SNHG1:41 | chr11:62855568-62855885 | 318 bp |
SNHG1:42 | chr11:62851874-62855885 | 3253 bp |
SNHG1:43 | chr11:62851874-62855885 | 2503 bp |
SNHG1:44 | chr11:62851989-62855885 | 2768 bp |
SNHG1:45 | chr11:62854080-62855885 | 1069 bp |
SNHG1:46 | chr11:62852297-62855473 | 573 bp |
SNHG1:47 | chr11:62851988-62855473 | 1308 bp |
SNHG1:48 | chr11:62851991-62855473 | 1051 bp |
SNHG1:49 | chr11:62852020-62855473 | 1192 bp |
SNHG1:5 | chr11:62851988-62855881 | 629 bp |
SNHG1:50 | chr11:62852252-62855473 | 739 bp |
SNHG1:51 | chr11:62852290-62855473 | 733 bp |
SNHG1:52 | chr11:62852609-62855473 | 353 bp |
SNHG1:53 | chr11:62852749-62855473 | 623 bp |
SNHG1:54 | chr11:62852832-62855473 | 621 bp |
SNHG1:55 | chr11:62853354-62855473 | 535 bp |
SNHG1:56 | chr11:62854680-62855473 | 579 bp |
SNHG1:57 | chr11:62853073-62855473 | 769 bp |
SNHG1:58 | chr11:62853547-62855473 | 526 bp |
SNHG1:59 | chr11:62853573-62855473 | 539 bp |
SNHG1:6 | chr11:62851988-62855874 | 1404 bp |
SNHG1:60 | chr11:62854368-62855473 | 563 bp |
SNHG1:61 | chr11:62854442-62855473 | 631 bp |
SNHG1:62 | chr11:62852867-62854693 | 979 bp |
SNHG1:63 | chr11:62853072-62853963 | 246 bp |
SNHG1:64 | chr11:62852048-62853963 | 1116 bp |
SNHG1:7 | chr11:62851988-62855874 | 1455 bp |
SNHG1:8 | chr11:62851988-62855874 | 1502 bp |
SNHG1:9 | chr11:62851988-62855874 | 1451 bp |
Locus conservation
Locus conservation? | ||||
---|---|---|---|---|
SNHG1 | no | no | no | no |
Available literature
- Zhu (2017), LncRNA16 is a potential biomarker for diagnosis of early-stage lung cancer that promotes cell proliferation by regulating the cell cycle., Oncotarget
- Ichigozaki (2016), Serum long non-coding RNA, snoRNA host gene 5 level as a new tumor marker of malignant melanoma., Exp. Dermatol.
- Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE
- Zhi (2015), The Use of Three Long Non-Coding RNAs as Potential Prognostic Indicators of Astrocytoma., PLoS ONE
- Li (2014), Discovery of Protein-lncRNA Interactions by Integrating Large-Scale CLIP-Seq and RNA-Seq Datasets., Front Bioeng Biotechnol
- You (2014), Noncoding RNA small nucleolar RNA host gene 1 promote cell proliferation in nonsmall cell lung cancer., Indian J Cancer
- Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.
- Clark (2012), Genome-wide analysis of long noncoding RNA stability., Genome Res.
- Mizutani (2012), Identification and characterization of novel genotoxic stress-inducible nuclear long noncoding RNAs in mammalian cells., PLoS ONE
- Mercer (2010), Long noncoding RNAs in neuronal-glial fate specification and oligodendrocyte lineage maturation., BMC Neurosci
- Friedel (2009), Conserved principles of mammalian transcriptional regulation revealed by RNA half-life., Nucleic Acids Res.
- Tanaka-Fujita (2007), Human and mouse protein-noncoding snoRNA host genes with dissimilar nucleotide sequences show chromosomal synteny., RNA
- Pelczar (1998), The host gene for intronic U17 small nucleolar RNAs in mammals has no protein-coding potential and is a member of the 5'-terminal oligopyrimidine gene family., Mol. Cell. Biol.
- Tycowski (1996), A mammalian gene with introns instead of exons generating stable RNA products., Nature