Gene: SNHG1
Basic information
LNCipedia gene ID: SNHG1
Location (hg19): chr11:62619346-62623483
Strand: -
Class: bidirectional
Sequence Ontology term: bidirectional_promoter_lncRNA
Transcripts: 64
Transcripts
| Transcript ID | Location (hg19) | Length |
|---|---|---|
| SNHG1:1 | chr11:62619410-62623483 | 3284 bp |
| SNHG1:10 | chr11:62619460-62623339 | 1487 bp |
| SNHG1:11 | chr11:62621552-62623284 | 996 bp |
| SNHG1:12 | chr11:62622154-62623230 | 870 bp |
| SNHG1:13 | chr11:62619460-62623218 | 1374 bp |
| SNHG1:14 | chr11:62619762-62622960 | 748 bp |
| SNHG1:15 | chr11:62621914-62622960 | 646 bp |
| SNHG1:16 | chr11:62619769-62622960 | 588 bp |
| SNHG1:17 | chr11:62622152-62622960 | 594 bp |
| SNHG1:18 | chr11:62619724-62622960 | 754 bp |
| SNHG1:19 | chr11:62621840-62622960 | 578 bp |
| SNHG1:2 | chr11:62619730-62623386 | 780 bp |
| SNHG1:20 | chr11:62620304-62622960 | 636 bp |
| SNHG1:21 | chr11:62620545-62622960 | 784 bp |
| SNHG1:22 | chr11:62620826-62622960 | 550 bp |
| SNHG1:23 | chr11:62621019-62622951 | 532 bp |
| SNHG1:24 | chr11:62620081-62622939 | 347 bp |
| SNHG1:25 | chr11:62619461-62622938 | 2001 bp |
| SNHG1:26 | chr11:62620221-62622932 | 610 bp |
| SNHG1:27 | chr11:62619463-62622932 | 1038 bp |
| SNHG1:28 | chr11:62619460-62622708 | 1071 bp |
| SNHG1:29 | chr11:62619492-62622708 | 955 bp |
| SNHG1:3 | chr11:62619460-62623360 | 1118 bp |
| SNHG1:30 | chr11:62621045-62622646 | 240 bp |
| SNHG1:31 | chr11:62620544-62621814 | 625 bp |
| SNHG1:32 | chr11:62619520-62621168 | 849 bp |
| SNHG1:33 | chr11:62619346-62623357 | 2740 bp |
| SNHG1:34 | chr11:62619346-62623357 | 2463 bp |
| SNHG1:35 | chr11:62619458-62623357 | 1066 bp |
| SNHG1:36 | chr11:62619460-62623357 | 633 bp |
| SNHG1:37 | chr11:62619460-62623357 | 1505 bp |
| SNHG1:38 | chr11:62619460-62623357 | 1513 bp |
| SNHG1:39 | chr11:62619730-62623357 | 751 bp |
| SNHG1:4 | chr11:62619461-62623357 | 2768 bp |
| SNHG1:40 | chr11:62622154-62623357 | 997 bp |
| SNHG1:41 | chr11:62623040-62623357 | 318 bp |
| SNHG1:42 | chr11:62619346-62623357 | 3253 bp |
| SNHG1:43 | chr11:62619346-62623357 | 2503 bp |
| SNHG1:44 | chr11:62619461-62623357 | 2768 bp |
| SNHG1:45 | chr11:62621552-62623357 | 1069 bp |
| SNHG1:46 | chr11:62619769-62622945 | 573 bp |
| SNHG1:47 | chr11:62619460-62622945 | 1308 bp |
| SNHG1:48 | chr11:62619463-62622945 | 1051 bp |
| SNHG1:49 | chr11:62619492-62622945 | 1192 bp |
| SNHG1:5 | chr11:62619460-62623353 | 629 bp |
| SNHG1:50 | chr11:62619724-62622945 | 739 bp |
| SNHG1:51 | chr11:62619762-62622945 | 733 bp |
| SNHG1:52 | chr11:62620081-62622945 | 353 bp |
| SNHG1:53 | chr11:62620221-62622945 | 623 bp |
| SNHG1:54 | chr11:62620304-62622945 | 621 bp |
| SNHG1:55 | chr11:62620826-62622945 | 535 bp |
| SNHG1:56 | chr11:62622152-62622945 | 579 bp |
| SNHG1:57 | chr11:62620545-62622945 | 769 bp |
| SNHG1:58 | chr11:62621019-62622945 | 526 bp |
| SNHG1:59 | chr11:62621045-62622945 | 539 bp |
| SNHG1:6 | chr11:62619460-62623346 | 1404 bp |
| SNHG1:60 | chr11:62621840-62622945 | 563 bp |
| SNHG1:61 | chr11:62621914-62622945 | 631 bp |
| SNHG1:62 | chr11:62620339-62622165 | 979 bp |
| SNHG1:63 | chr11:62620544-62621435 | 246 bp |
| SNHG1:64 | chr11:62619520-62621435 | 1116 bp |
| SNHG1:7 | chr11:62619460-62623346 | 1455 bp |
| SNHG1:8 | chr11:62619460-62623346 | 1502 bp |
| SNHG1:9 | chr11:62619460-62623346 | 1451 bp |
Locus conservation
| Locus conservation? |  |
 |
 |
 |
|---|---|---|---|---|
| SNHG1 | no | no | no | no |
Available literature
- Zhu (2017), LncRNA16 is a potential biomarker for diagnosis of early-stage lung cancer that promotes cell proliferation by regulating the cell cycle., Oncotarget
- Ichigozaki (2016), Serum long non-coding RNA, snoRNA host gene 5 level as a new tumor marker of malignant melanoma., Exp. Dermatol.
- Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE
- Zhi (2015), The Use of Three Long Non-Coding RNAs as Potential Prognostic Indicators of Astrocytoma., PLoS ONE
- Li (2014), Discovery of Protein-lncRNA Interactions by Integrating Large-Scale CLIP-Seq and RNA-Seq Datasets., Front Bioeng Biotechnol
- You (2014), Noncoding RNA small nucleolar RNA host gene 1 promote cell proliferation in nonsmall cell lung cancer., Indian J Cancer
- Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.
- Clark (2012), Genome-wide analysis of long noncoding RNA stability., Genome Res.
- Mizutani (2012), Identification and characterization of novel genotoxic stress-inducible nuclear long noncoding RNAs in mammalian cells., PLoS ONE
- Mercer (2010), Long noncoding RNAs in neuronal-glial fate specification and oligodendrocyte lineage maturation., BMC Neurosci
- Friedel (2009), Conserved principles of mammalian transcriptional regulation revealed by RNA half-life., Nucleic Acids Res.
- Tanaka-Fujita (2007), Human and mouse protein-noncoding snoRNA host genes with dissimilar nucleotide sequences show chromosomal synteny., RNA
- Pelczar (1998), The host gene for intronic U17 small nucleolar RNAs in mammals has no protein-coding potential and is a member of the 5'-terminal oligopyrimidine gene family., Mol. Cell. Biol.
- Tycowski (1996), A mammalian gene with introns instead of exons generating stable RNA products., Nature