Gene: HAGLR
Basic information
LNCipedia gene ID: HAGLR
Location (hg19): chr2:177028779-177053690
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA_gene
Transcripts: 57
Transcripts
| Transcript ID | Location (hg19) | Length |
|---|---|---|
| HAGLR:1 | chr2:177041184-177053686 | 545 bp |
| HAGLR:10 | chr2:177041208-177053207 | 623 bp |
| HAGLR:11 | chr2:177037073-177053172 | 4537 bp |
| HAGLR:12 | chr2:177040914-177052997 | 945 bp |
| HAGLR:13 | chr2:177037917-177052997 | 3942 bp |
| HAGLR:14 | chr2:177037065-177043732 | 5813 bp |
| HAGLR:15 | chr2:177037923-177043012 | 4235 bp |
| HAGLR:16 | chr2:177037917-177042857 | 4086 bp |
| HAGLR:17 | chr2:177037917-177042857 | 3923 bp |
| HAGLR:18 | chr2:177037917-177042857 | 3905 bp |
| HAGLR:19 | chr2:177037917-177042857 | 3893 bp |
| HAGLR:2 | chr2:177037924-177053686 | 3805 bp |
| HAGLR:20 | chr2:177037917-177042857 | 3794 bp |
| HAGLR:21 | chr2:177037917-177042857 | 3782 bp |
| HAGLR:22 | chr2:177041200-177042853 | 636 bp |
| HAGLR:23 | chr2:177041114-177042853 | 581 bp |
| HAGLR:24 | chr2:177038005-177042818 | 3959 bp |
| HAGLR:25 | chr2:177041108-177042812 | 558 bp |
| HAGLR:26 | chr2:177041200-177042811 | 576 bp |
| HAGLR:27 | chr2:177041114-177042770 | 609 bp |
| HAGLR:28 | chr2:177040887-177042296 | 771 bp |
| HAGLR:29 | chr2:177038991-177042239 | 2610 bp |
| HAGLR:3 | chr2:177037917-177053686 | 3812 bp |
| HAGLR:30 | chr2:177037923-177053690 | 3810 bp |
| HAGLR:31 | chr2:177041184-177053690 | 549 bp |
| HAGLR:32 | chr2:177037923-177053279 | 3864 bp |
| HAGLR:33 | chr2:177037923-177053279 | 3794 bp |
| HAGLR:34 | chr2:177040158-177053279 | 1629 bp |
| HAGLR:35 | chr2:177040158-177053279 | 1600 bp |
| HAGLR:36 | chr2:177040158-177053279 | 1612 bp |
| HAGLR:37 | chr2:177040722-177053279 | 995 bp |
| HAGLR:38 | chr2:177040914-177053279 | 1227 bp |
| HAGLR:39 | chr2:177041208-177053279 | 695 bp |
| HAGLR:4 | chr2:177037917-177053300 | 4037 bp |
| HAGLR:40 | chr2:177041252-177053279 | 681 bp |
| HAGLR:41 | chr2:177037923-177042837 | 3897 bp |
| HAGLR:42 | chr2:177040887-177042837 | 1312 bp |
| HAGLR:43 | chr2:177041200-177042837 | 620 bp |
| HAGLR:44 | chr2:177037923-177042837 | 4060 bp |
| HAGLR:45 | chr2:177040158-177042837 | 1825 bp |
| HAGLR:46 | chr2:177041108-177042837 | 583 bp |
| HAGLR:47 | chr2:177041114-177042837 | 565 bp |
| HAGLR:48 | chr2:177041114-177042837 | 676 bp |
| HAGLR:49 | chr2:177041200-177042837 | 602 bp |
| HAGLR:5 | chr2:177037917-177053300 | 4007 bp |
| HAGLR:50 | chr2:177038402-177053686 | 3327 bp |
| HAGLR:51 | chr2:177037990-177053319 | 3767 bp |
| HAGLR:52 | chr2:177037961-177053274 | 3821 bp |
| HAGLR:53 | chr2:177040501-177053274 | 1322 bp |
| HAGLR:54 | chr2:177038990-177053259 | 2847 bp |
| HAGLR:55 | chr2:177037730-177053259 | 4183 bp |
| HAGLR:56 | chr2:177028779-177042827 | 465 bp |
| HAGLR:57 | chr2:177041204-177042296 | 454 bp |
| HAGLR:6 | chr2:177037917-177053300 | 3891 bp |
| HAGLR:7 | chr2:177037917-177053300 | 3821 bp |
| HAGLR:8 | chr2:177040722-177053268 | 984 bp |
| HAGLR:9 | chr2:177041252-177053259 | 661 bp |
Locus conservation
Available literature
- Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry
- Li (2014), starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data., Nucleic Acids Res.
- Yarmishyn (2014), HOXD-AS1 is a novel lncRNA encoded in HOXD cluster and a marker of neuroblastoma progression revealed via integrative analysis of noncoding transcriptome., BMC Genomics
- Batagov (2013), Role of genomic architecture in the expression dynamics of long noncoding RNAs during differentiation of human neuroblastoma cells., BMC Syst Biol
- Sauvageau (2013), Multiple knockout mouse models reveal lincRNAs are required for life and brain development., Elife