Downloads
LNCipedia download files are for non-commercial use only. Any other use should be approved in writing from Ghent University.
Full database
| BED | FASTA | GFF | GTF (UCSC compatible) | |
|---|---|---|---|---|
| Version 5.2 | GRCh37/hg19 GRCh38/hg38 |
download | GRCh37/hg19 GRCh38/hg38 |
GRCh37/hg19 GRCh38/hg38 |
High confidence set (putative protein coding genes are excluded)
| BED | FASTA | GFF | GTF (UCSC compatible) | |
|---|---|---|---|---|
| Version 5.2 | GRCh37/hg19 GRCh38/hg38 |
download | GRCh37/hg19 GRCh38/hg38 |
GRCh37/hg19 GRCh38/hg38 |
Metadata
- Locus conservation to Chimpansee
- Locus conservation to Mouse
- Locus conservation to Drosophyla
- Locus conservation to Zebrafish
Conversion tables
- LNCipedia version 5.2 gene IDs to Ensembl 92 gene IDs
- LNCipedia version 5.2 transcript IDs to Ensembl 92 IDs
- LNCipedia version 5.2 transcript IDs to RefSeq IDs (NCBI annotation release 106)
- LNCipedia version 5.1 to LNCipedia version 5.2
- LNCipedia version 5.0 to LNCipedia version 5.2
UCSC Genome Browser trackhub
LNCipedia provides a trackhub to directly display the annotations in the UCSC Genome Browser and other genome browsers.
Click here to load the tracks in the UCSC Genome Browser or copy-paste this url in a genome browser of choice: https://www.lncipedia.org/trackhub/hub.txt
IGV
Use the links below to open the most recent version of LNCipedia in the Integrative Genomics Viewer (IGV).Custom exports
You can use the search page to generate custom exports
Due to an issue with the IDs in LNCipedia 5.1 we do not recommend using this version.