Gene: SNHG5
Basic information
LNCipedia gene ID: SNHG5
Location (hg19): chr6:86368825-86388965
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA_gene
Transcripts: 49
Transcripts
| Transcript ID | Location (hg19) | Length |
|---|---|---|
| SNHG5:1 | chr6:86385900-86388499 | 1380 bp |
| SNHG5:10 | chr6:86386726-86388440 | 1078 bp |
| SNHG5:11 | chr6:86375570-86388438 | 1029 bp |
| SNHG5:12 | chr6:86385900-86388438 | 1824 bp |
| SNHG5:13 | chr6:86386725-86388420 | 981 bp |
| SNHG5:14 | chr6:86386800-86388370 | 696 bp |
| SNHG5:15 | chr6:86386802-86388291 | 401 bp |
| SNHG5:16 | chr6:86386802-86388238 | 641 bp |
| SNHG5:17 | chr6:86375360-86388154 | 886 bp |
| SNHG5:18 | chr6:86386802-86388154 | 631 bp |
| SNHG5:19 | chr6:86375490-86388149 | 672 bp |
| SNHG5:2 | chr6:86386708-86388454 | 1032 bp |
| SNHG5:20 | chr6:86386814-86388131 | 374 bp |
| SNHG5:21 | chr6:86386823-86388131 | 598 bp |
| SNHG5:22 | chr6:86386801-86388123 | 632 bp |
| SNHG5:23 | chr6:86387187-86387977 | 489 bp |
| SNHG5:24 | chr6:86370668-86387953 | 711 bp |
| SNHG5:25 | chr6:86370668-86387953 | 851 bp |
| SNHG5:26 | chr6:86386802-86387923 | 257 bp |
| SNHG5:27 | chr6:86387047-86387917 | 388 bp |
| SNHG5:28 | chr6:86386800-86387711 | 680 bp |
| SNHG5:29 | chr6:86368825-86388965 | 3488 bp |
| SNHG5:3 | chr6:86375278-86388454 | 753 bp |
| SNHG5:30 | chr6:86368825-86388965 | 6040 bp |
| SNHG5:31 | chr6:86378325-86388965 | 5362 bp |
| SNHG5:32 | chr6:86373445-86388965 | 3616 bp |
| SNHG5:33 | chr6:86381557-86388965 | 6530 bp |
| SNHG5:34 | chr6:86387142-86388451 | 206 bp |
| SNHG5:35 | chr6:86387142-86388451 | 301 bp |
| SNHG5:36 | chr6:86387160-86388451 | 297 bp |
| SNHG5:37 | chr6:86370710-86388451 | 568 bp |
| SNHG5:38 | chr6:86386800-86388451 | 1420 bp |
| SNHG5:39 | chr6:86387187-86388451 | 963 bp |
| SNHG5:4 | chr6:86386802-86388451 | 430 bp |
| SNHG5:40 | chr6:86375570-86388451 | 1042 bp |
| SNHG5:41 | chr6:86386725-86388451 | 1012 bp |
| SNHG5:42 | chr6:86386800-86388451 | 777 bp |
| SNHG5:43 | chr6:86386802-86388451 | 430 bp |
| SNHG5:44 | chr6:86386802-86388451 | 1013 bp |
| SNHG5:45 | chr6:86386802-86388451 | 854 bp |
| SNHG5:46 | chr6:86386802-86388451 | 561 bp |
| SNHG5:47 | chr6:86386846-86388451 | 998 bp |
| SNHG5:48 | chr6:86387047-86387910 | 381 bp |
| SNHG5:49 | chr6:86369610-86370324 | 715 bp |
| SNHG5:5 | chr6:86386846-86388451 | 998 bp |
| SNHG5:6 | chr6:86370710-86388451 | 568 bp |
| SNHG5:7 | chr6:86386725-86388451 | 507 bp |
| SNHG5:8 | chr6:86386726-86388451 | 584 bp |
| SNHG5:9 | chr6:86386802-86388440 | 1002 bp |
Locus conservation
| Locus conservation? |  |
 |
 |
 |
|---|---|---|---|---|
| SNHG5 | no | no | no | no |
Available literature
- Damas (2016), SNHG5 promotes colorectal cancer cell survival by counteracting STAU1-mediated mRNA destabilization., Nat Commun
- Ichigozaki (2016), Serum long non-coding RNA, snoRNA host gene 5 level as a new tumor marker of malignant melanoma., Exp. Dermatol.
- Fadista (2014), Global genomic and transcriptomic analysis of human pancreatic islets reveals novel genes influencing glucose metabolism., Proc. Natl. Acad. Sci. U.S.A.
- Rajpathak (2014), Human 45,X fibroblast transcriptome reveals distinct differentially expressed genes including long noncoding RNAs potentially associated with the pathophysiology of Turner syndrome., PLoS ONE
- Clark (2012), Genome-wide analysis of long noncoding RNA stability., Genome Res.
- Friedel (2009), Conserved principles of mammalian transcriptional regulation revealed by RNA half-life., Nucleic Acids Res.
- Tanaka-Fujita (2007), Human and mouse protein-noncoding snoRNA host genes with dissimilar nucleotide sequences show chromosomal synteny., RNA
- Tanaka (2000), Intronic U50 small-nucleolar-RNA (snoRNA) host gene of no protein-coding potential is mapped at the chromosome breakpoint t(3;6)(q27;q15) of human B-cell lymphoma., Genes Cells