Gene: SOX2-OT
Basic information
LNCipedia gene ID: SOX2-OT
Location (hg19): chr3:180707550-181554668
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA_gene
Transcripts: 127
Transcripts
| Transcript ID | Location (hg19) | Length |
|---|---|---|
| SOX2-OT:10 | chr3:180774473-181417572 | 609 bp |
| SOX2-OT:100 | chr3:181416432-181458553 | 1500 bp |
| SOX2-OT:101 | chr3:181416598-181458651 | 2011 bp |
| SOX2-OT:102 | chr3:181417011-181458535 | 1948 bp |
| SOX2-OT:103 | chr3:181417386-181457509 | 607 bp |
| SOX2-OT:104 | chr3:181417386-181501624 | 626 bp |
| SOX2-OT:105 | chr3:181417386-181457618 | 753 bp |
| SOX2-OT:106 | chr3:181417386-181554540 | 690 bp |
| SOX2-OT:107 | chr3:181417386-181496801 | 873 bp |
| SOX2-OT:108 | chr3:181417386-181427638 | 469 bp |
| SOX2-OT:109 | chr3:181417386-181508791 | 745 bp |
| SOX2-OT:11 | chr3:180892678-181417832 | 1342 bp |
| SOX2-OT:110 | chr3:181417386-181532091 | 512 bp |
| SOX2-OT:111 | chr3:181417386-181554426 | 772 bp |
| SOX2-OT:112 | chr3:181417386-181417888 | 383 bp |
| SOX2-OT:113 | chr3:181417386-181508851 | 677 bp |
| SOX2-OT:114 | chr3:181417386-181508825 | 759 bp |
| SOX2-OT:115 | chr3:181417386-181458983 | 836 bp |
| SOX2-OT:116 | chr3:181417386-181508720 | 789 bp |
| SOX2-OT:117 | chr3:181417386-181496392 | 619 bp |
| SOX2-OT:118 | chr3:181417386-181457458 | 664 bp |
| SOX2-OT:119 | chr3:181417386-181457611 | 798 bp |
| SOX2-OT:12 | chr3:180892813-181281643 | 560 bp |
| SOX2-OT:120 | chr3:181417386-181554667 | 850 bp |
| SOX2-OT:121 | chr3:181417386-181508782 | 743 bp |
| SOX2-OT:122 | chr3:181417394-181458590 | 1711 bp |
| SOX2-OT:123 | chr3:181417625-181458611 | 1675 bp |
| SOX2-OT:124 | chr3:181428890-181458660 | 1676 bp |
| SOX2-OT:125 | chr3:181440981-181458628 | 1703 bp |
| SOX2-OT:126 | chr3:181443764-181458525 | 1279 bp |
| SOX2-OT:127 | chr3:181444813-181460205 | 2920 bp |
| SOX2-OT:128 | chr3:181445506-181458469 | 1444 bp |
| SOX2-OT:13 | chr3:180892932-181457445 | 561 bp |
| SOX2-OT:14 | chr3:180892932-181460013 | 3129 bp |
| SOX2-OT:15 | chr3:181077273-181417425 | 649 bp |
| SOX2-OT:16 | chr3:181268542-181457475 | 864 bp |
| SOX2-OT:17 | chr3:181268543-181348792 | 716 bp |
| SOX2-OT:18 | chr3:181268561-181417671 | 847 bp |
| SOX2-OT:19 | chr3:181268567-181417584 | 675 bp |
| SOX2-OT:2 | chr3:180707558-180775032 | 751 bp |
| SOX2-OT:20 | chr3:181268582-181389400 | 348 bp |
| SOX2-OT:21 | chr3:181281244-181348678 | 578 bp |
| SOX2-OT:22 | chr3:181281244-181389529 | 1252 bp |
| SOX2-OT:23 | chr3:181281498-181389529 | 454 bp |
| SOX2-OT:24 | chr3:181281509-181460261 | 3576 bp |
| SOX2-OT:25 | chr3:181318946-181417671 | 737 bp |
| SOX2-OT:26 | chr3:181328122-181457481 | 606 bp |
| SOX2-OT:27 | chr3:181328122-181460013 | 3532 bp |
| SOX2-OT:28 | chr3:181328122-181460013 | 3424 bp |
| SOX2-OT:29 | chr3:181328122-181460013 | 3138 bp |
| SOX2-OT:3 | chr3:180707558-181417671 | 836 bp |
| SOX2-OT:30 | chr3:181328151-181459018 | 2508 bp |
| SOX2-OT:31 | chr3:181328312-181457661 | 882 bp |
| SOX2-OT:32 | chr3:181328317-181508734 | 560 bp |
| SOX2-OT:33 | chr3:181328329-181417668 | 561 bp |
| SOX2-OT:34 | chr3:181328397-181428083 | 979 bp |
| SOX2-OT:35 | chr3:181417281-181457867 | 902 bp |
| SOX2-OT:36 | chr3:181417284-181457786 | 926 bp |
| SOX2-OT:37 | chr3:181417382-181417888 | 387 bp |
| SOX2-OT:38 | chr3:181417383-181508720 | 792 bp |
| SOX2-OT:39 | chr3:181417383-181457509 | 610 bp |
| SOX2-OT:4 | chr3:180707569-180893607 | 566 bp |
| SOX2-OT:40 | chr3:181417383-181501624 | 629 bp |
| SOX2-OT:41 | chr3:181417383-181427638 | 472 bp |
| SOX2-OT:42 | chr3:181417383-181532091 | 515 bp |
| SOX2-OT:43 | chr3:181417383-181457618 | 756 bp |
| SOX2-OT:44 | chr3:181417383-181457458 | 667 bp |
| SOX2-OT:45 | chr3:181417383-181458983 | 839 bp |
| SOX2-OT:46 | chr3:181417383-181554667 | 853 bp |
| SOX2-OT:47 | chr3:181417383-181508791 | 748 bp |
| SOX2-OT:48 | chr3:181417383-181554426 | 775 bp |
| SOX2-OT:49 | chr3:181417383-181508782 | 746 bp |
| SOX2-OT:5 | chr3:180707571-181417671 | 1012 bp |
| SOX2-OT:50 | chr3:181417383-181554540 | 693 bp |
| SOX2-OT:51 | chr3:181417383-181496801 | 876 bp |
| SOX2-OT:52 | chr3:181417383-181496392 | 622 bp |
| SOX2-OT:53 | chr3:181417383-181508825 | 762 bp |
| SOX2-OT:54 | chr3:181417383-181508851 | 680 bp |
| SOX2-OT:55 | chr3:181417383-181457611 | 801 bp |
| SOX2-OT:56 | chr3:181417386-181496449 | 581 bp |
| SOX2-OT:57 | chr3:181417387-181554593 | 762 bp |
| SOX2-OT:58 | chr3:181417387-181554619 | 905 bp |
| SOX2-OT:59 | chr3:181417407-181427390 | 954 bp |
| SOX2-OT:6 | chr3:180721562-180893607 | 507 bp |
| SOX2-OT:60 | chr3:181417407-181420178 | 495 bp |
| SOX2-OT:61 | chr3:181417407-181457549 | 660 bp |
| SOX2-OT:62 | chr3:181417407-181454267 | 572 bp |
| SOX2-OT:63 | chr3:181417407-181420208 | 575 bp |
| SOX2-OT:64 | chr3:181417409-181425299 | 445 bp |
| SOX2-OT:65 | chr3:181417625-181457554 | 618 bp |
| SOX2-OT:66 | chr3:181417628-181554668 | 468 bp |
| SOX2-OT:67 | chr3:181419215-181458025 | 692 bp |
| SOX2-OT:68 | chr3:181543416-181554667 | 540 bp |
| SOX2-OT:69 | chr3:180707550-180835282 | 796 bp |
| SOX2-OT:7 | chr3:180774468-181457813 | 1239 bp |
| SOX2-OT:70 | chr3:180707561-180776533 | 1622 bp |
| SOX2-OT:71 | chr3:180707561-180776114 | 1242 bp |
| SOX2-OT:72 | chr3:180707561-180894301 | 1199 bp |
| SOX2-OT:73 | chr3:180707561-181049311 | 1238 bp |
| SOX2-OT:74 | chr3:180707563-180741038 | 3274 bp |
| SOX2-OT:75 | chr3:180707567-181458560 | 2151 bp |
| SOX2-OT:76 | chr3:180707567-181458674 | 2291 bp |
| SOX2-OT:77 | chr3:180707575-180749759 | 1468 bp |
| SOX2-OT:78 | chr3:180707578-181283953 | 2779 bp |
| SOX2-OT:79 | chr3:180707578-181130857 | 392 bp |
| SOX2-OT:8 | chr3:180774468-181460013 | 3547 bp |
| SOX2-OT:80 | chr3:180707578-180848784 | 1390 bp |
| SOX2-OT:81 | chr3:180707578-181049290 | 1080 bp |
| SOX2-OT:82 | chr3:180707581-181458599 | 2207 bp |
| SOX2-OT:83 | chr3:180707604-181458608 | 1766 bp |
| SOX2-OT:84 | chr3:180774468-181460016 | 3442 bp |
| SOX2-OT:85 | chr3:180774468-181460016 | 3550 bp |
| SOX2-OT:86 | chr3:180774471-181282360 | 1068 bp |
| SOX2-OT:87 | chr3:180892813-181458602 | 2234 bp |
| SOX2-OT:88 | chr3:180892932-181460016 | 3132 bp |
| SOX2-OT:89 | chr3:180892957-181349968 | 1884 bp |
| SOX2-OT:9 | chr3:180774468-181460013 | 3439 bp |
| SOX2-OT:90 | chr3:181179370-181460672 | 4109 bp |
| SOX2-OT:91 | chr3:181179372-181329435 | 1115 bp |
| SOX2-OT:92 | chr3:181328122-181460016 | 3141 bp |
| SOX2-OT:93 | chr3:181328122-181460016 | 3427 bp |
| SOX2-OT:94 | chr3:181328122-181460016 | 3535 bp |
| SOX2-OT:95 | chr3:181328257-181332442 | 1967 bp |
| SOX2-OT:96 | chr3:181328311-181458474 | 1700 bp |
| SOX2-OT:97 | chr3:181328312-181391190 | 2276 bp |
| SOX2-OT:98 | chr3:181328317-181339671 | 989 bp |
| SOX2-OT:99 | chr3:181328558-181458474 | 1672 bp |
Locus conservation
| Locus conservation? |  |
 |
 |
 |
|---|---|---|---|---|
| SOX2-OT | no | no | no | no |
Available literature
- Iranpour (2016), Expression analysis of four long noncoding RNAs in breast cancer., Tumour Biol.
- Shi (2015), Up-regulation of long non-coding RNA Sox2ot promotes hepatocellular carcinoma cell metastasis and correlates with poor prognosis., Int J Clin Exp Pathol
- Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.
- Wang (2015), Genome-scale long noncoding RNA expression pattern in squamous cell lung cancer., Sci Rep
- Askarian-Amiri (2014), Emerging role of long non-coding RNA SOX2OT in SOX2 regulation in breast cancer., PLoS ONE
- Chaudhry (2014), Small nucleolar RNA host genes and long non-coding RNA responses in directly irradiated and bystander cells., Cancer Biother. Radiopharm.
- Hou (2014), A long noncoding RNA Sox2ot regulates lung cancer cell proliferation and is a prognostic indicator of poor survival., Int. J. Biochem. Cell Biol.
- Shahryari (2014), Two novel splice variants of SOX2OT, SOX2OT-S1, and SOX2OT-S2 are coupregulated with SOX2 and OCT4 in esophageal squamous cell carcinoma., Stem Cells
- Zhao (2014), Expression profiles and initial confirmation of long noncoding RNAs in Chinese patients with pulmonary adenocarcinoma., Onco Targets Ther
- Chaudhry (2013), Expression pattern of small nucleolar RNA host genes and long non-coding RNA in X-rays-treated lymphoblastoid cells., Int J Mol Sci
- Qureshi (2012), Emerging roles of non-coding RNAs in brain evolution, development, plasticity and disease., Nat. Rev. Neurosci.
- Amaral (2009), Complex architecture and regulated expression of the Sox2ot locus during vertebrate development., RNA
- Fantes (2003), Mutations in SOX2 cause anophthalmia., Nat. Genet.