Gene: lnc-FAM84B-15
Basic information
LNCipedia gene ID: lnc-FAM84B-15
Location (hg19): chr8:128084939-128494384
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA_gene
Transcripts: 108
Transcripts
| Transcript ID | Location (hg19) | Length |
|---|---|---|
| lnc-FAM84B-15:100 | chr8:128091140-128197488 | 656 bp |
| lnc-FAM84B-15:101 | chr8:128180667-128192083 | 1069 bp |
| lnc-FAM84B-15:102 | chr8:128180597-128187089 | 1421 bp |
| lnc-FAM84B-15:103 | chr8:128128907-128156662 | 1172 bp |
| lnc-FAM84B-15:106 | chr8:128090684-128094527 | 857 bp |
| lnc-FAM84B-15:109 | chr8:128455595-128494384 | 1412 bp |
| lnc-FAM84B-15:110 | chr8:128302062-128494384 | 1420 bp |
| lnc-FAM84B-15:111 | chr8:128301921-128494384 | 1561 bp |
| lnc-FAM84B-15:112 | chr8:128302063-128433619 | 789 bp |
| lnc-FAM84B-15:113 | chr8:128302062-128433619 | 930 bp |
| lnc-FAM84B-15:114 | chr8:128089804-128307037 | 33734 bp |
| lnc-FAM84B-15:115 | chr8:128299755-128306973 | 2625 bp |
| lnc-FAM84B-15:116 | chr8:128299755-128306973 | 4161 bp |
| lnc-FAM84B-15:117 | chr8:128299755-128306973 | 7219 bp |
| lnc-FAM84B-15:118 | chr8:128289293-128300515 | 2131 bp |
| lnc-FAM84B-15:119 | chr8:128234036-128241550 | 3933 bp |
| lnc-FAM84B-15:120 | chr8:128181152-128241550 | 2705 bp |
| lnc-FAM84B-15:121 | chr8:128240812-128241377 | 566 bp |
| lnc-FAM84B-15:122 | chr8:128219627-128231513 | 2795 bp |
| lnc-FAM84B-15:123 | chr8:128220111-128231333 | 2131 bp |
| lnc-FAM84B-15:124 | chr8:128220111-128231331 | 2129 bp |
| lnc-FAM84B-15:125 | chr8:128221579-128225619 | 1238 bp |
| lnc-FAM84B-15:126 | chr8:128197880-128215467 | 367 bp |
| lnc-FAM84B-15:127 | chr8:128200031-128209872 | 323 bp |
| lnc-FAM84B-15:128 | chr8:128197391-128200340 | 776 bp |
| lnc-FAM84B-15:129 | chr8:128153591-128197980 | 1349 bp |
| lnc-FAM84B-15:130 | chr8:128128656-128156437 | 1198 bp |
| lnc-FAM84B-15:131 | chr8:128098508-128099755 | 1248 bp |
| lnc-FAM84B-15:132 | chr8:128091145-128094513 | 382 bp |
| lnc-FAM84B-15:133 | chr8:128084939-128094466 | 575 bp |
| lnc-FAM84B-15:14 | chr8:128234567-128239786 | 1638 bp |
| lnc-FAM84B-15:15 | chr8:128235492-128239786 | 571 bp |
| lnc-FAM84B-15:16 | chr8:128234559-128236721 | 1430 bp |
| lnc-FAM84B-15:17 | chr8:128180604-128236721 | 966 bp |
| lnc-FAM84B-15:18 | chr8:128197774-128236681 | 816 bp |
| lnc-FAM84B-15:19 | chr8:128180604-128235911 | 1173 bp |
| lnc-FAM84B-15:20 | chr8:128235253-128235911 | 356 bp |
| lnc-FAM84B-15:21 | chr8:128196995-128231640 | 1868 bp |
| lnc-FAM84B-15:23 | chr8:128180604-128231505 | 1443 bp |
| lnc-FAM84B-15:24 | chr8:128216657-128231483 | 5735 bp |
| lnc-FAM84B-15:25 | chr8:128173824-128231482 | 1154 bp |
| lnc-FAM84B-15:26 | chr8:128181087-128231478 | 875 bp |
| lnc-FAM84B-15:27 | chr8:128180667-128231465 | 1107 bp |
| lnc-FAM84B-15:28 | chr8:128191726-128231391 | 866 bp |
| lnc-FAM84B-15:29 | chr8:128197292-128231372 | 1382 bp |
| lnc-FAM84B-15:30 | chr8:128197001-128231368 | 1684 bp |
| lnc-FAM84B-15:31 | chr8:128174079-128231363 | 959 bp |
| lnc-FAM84B-15:34 | chr8:128180604-128231240 | 925 bp |
| lnc-FAM84B-15:35 | chr8:128196984-128231236 | 1385 bp |
| lnc-FAM84B-15:36 | chr8:128180953-128231214 | 1047 bp |
| lnc-FAM84B-15:37 | chr8:128191422-128231213 | 1050 bp |
| lnc-FAM84B-15:38 | chr8:128180921-128231213 | 2055 bp |
| lnc-FAM84B-15:39 | chr8:128180953-128231213 | 1356 bp |
| lnc-FAM84B-15:40 | chr8:128197000-128231213 | 1404 bp |
| lnc-FAM84B-15:41 | chr8:128165116-128231213 | 1360 bp |
| lnc-FAM84B-15:42 | chr8:128180953-128231213 | 915 bp |
| lnc-FAM84B-15:43 | chr8:128197292-128231213 | 1313 bp |
| lnc-FAM84B-15:44 | chr8:128197292-128231212 | 1184 bp |
| lnc-FAM84B-15:45 | chr8:128128905-128231212 | 1184 bp |
| lnc-FAM84B-15:46 | chr8:128197000-128231212 | 1493 bp |
| lnc-FAM84B-15:47 | chr8:128180667-128231181 | 1146 bp |
| lnc-FAM84B-15:48 | chr8:128180919-128231180 | 974 bp |
| lnc-FAM84B-15:49 | chr8:128180667-128231176 | 2219 bp |
| lnc-FAM84B-15:50 | chr8:128180667-128231176 | 993 bp |
| lnc-FAM84B-15:51 | chr8:128197852-128231170 | 1558 bp |
| lnc-FAM84B-15:52 | chr8:128180667-128231154 | 1140 bp |
| lnc-FAM84B-15:53 | chr8:128197774-128231133 | 1287 bp |
| lnc-FAM84B-15:54 | chr8:128191708-128231119 | 871 bp |
| lnc-FAM84B-15:55 | chr8:128180953-128231115 | 870 bp |
| lnc-FAM84B-15:56 | chr8:128197774-128231097 | 970 bp |
| lnc-FAM84B-15:57 | chr8:128180944-128231087 | 2001 bp |
| lnc-FAM84B-15:59 | chr8:128192607-128221880 | 1373 bp |
| lnc-FAM84B-15:60 | chr8:128200030-128220913 | 679 bp |
| lnc-FAM84B-15:61 | chr8:128181063-128220572 | 886 bp |
| lnc-FAM84B-15:62 | chr8:128165122-128220447 | 1156 bp |
| lnc-FAM84B-15:63 | chr8:128181076-128219083 | 1244 bp |
| lnc-FAM84B-15:64 | chr8:128197774-128218368 | 1522 bp |
| lnc-FAM84B-15:65 | chr8:128197262-128217961 | 1554 bp |
| lnc-FAM84B-15:66 | chr8:128197000-128217841 | 1606 bp |
| lnc-FAM84B-15:67 | chr8:128197774-128217814 | 1157 bp |
| lnc-FAM84B-15:68 | chr8:128180651-128217767 | 1292 bp |
| lnc-FAM84B-15:69 | chr8:128196995-128217756 | 1415 bp |
| lnc-FAM84B-15:70 | chr8:128180667-128217712 | 1206 bp |
| lnc-FAM84B-15:71 | chr8:128173829-128217677 | 1411 bp |
| lnc-FAM84B-15:72 | chr8:128180667-128217640 | 1285 bp |
| lnc-FAM84B-15:73 | chr8:128165116-128215472 | 1546 bp |
| lnc-FAM84B-15:75 | chr8:128159520-128215465 | 2204 bp |
| lnc-FAM84B-15:76 | chr8:128180899-128215465 | 958 bp |
| lnc-FAM84B-15:77 | chr8:128180605-128215443 | 1251 bp |
| lnc-FAM84B-15:78 | chr8:128180438-128215420 | 770 bp |
| lnc-FAM84B-15:79 | chr8:128165122-128215411 | 818 bp |
| lnc-FAM84B-15:80 | chr8:128180383-128214482 | 1351 bp |
| lnc-FAM84B-15:81 | chr8:128152521-128214377 | 1530 bp |
| lnc-FAM84B-15:82 | chr8:128199052-128214325 | 1117 bp |
| lnc-FAM84B-15:83 | chr8:128197292-128213368 | 1091 bp |
| lnc-FAM84B-15:84 | chr8:128198249-128210392 | 1074 bp |
| lnc-FAM84B-15:86 | chr8:128200030-128209872 | 324 bp |
| lnc-FAM84B-15:87 | chr8:128180604-128209801 | 1061 bp |
| lnc-FAM84B-15:88 | chr8:128197292-128204560 | 1545 bp |
| lnc-FAM84B-15:89 | chr8:128197835-128203503 | 842 bp |
| lnc-FAM84B-15:90 | chr8:128197006-128203087 | 2114 bp |
| lnc-FAM84B-15:91 | chr8:128197006-128201348 | 2329 bp |
| lnc-FAM84B-15:92 | chr8:128197292-128201297 | 1832 bp |
| lnc-FAM84B-15:93 | chr8:128165116-128201088 | 2091 bp |
| lnc-FAM84B-15:94 | chr8:128180604-128200639 | 1384 bp |
| lnc-FAM84B-15:95 | chr8:128197725-128200455 | 561 bp |
| lnc-FAM84B-15:96 | chr8:128180899-128200455 | 1065 bp |
| lnc-FAM84B-15:97 | chr8:128174069-128200365 | 832 bp |
Locus conservation
| Locus conservation? |  |
 |
 |
 |
|---|---|---|---|---|
| lnc-FAM84B-15 | no | no | no | no |
Available literature
- Li (2016), Cancer RNA-Seq Nexus: a database of phenotype-specific transcriptome profiling in cancer cells., Nucleic Acids Res.
- Xie (2016), Long non-coding RNAs in colorectal cancer., Oncotarget
- Al-Tassan (2015), A new GWAS and meta-analysis with 1000Genomes imputation identifies novel risk variants for colorectal cancer., Sci Rep
- Cabanski (2015), Pan-cancer transcriptome analysis reveals long noncoding RNAs with conserved function., RNA Biol
- Deng (2015), Long noncoding RNA CCAT1 promotes hepatocellular carcinoma progression by functioning as let-7 sponge., J. Exp. Clin. Cancer Res.
- Hu (2015), Downregulation of NUF2 inhibits tumor growth and induces apoptosis by regulating lncRNA AF339813., Int J Clin Exp Pathol
- Kim (2015), MYC-repressed long noncoding RNAs antagonize MYC-induced cell proliferation and cell cycle progression., Oncotarget
- Ma (2015), Genetic variant in 8q24 is associated with prognosis for gastric cancer in a Chinese population., J. Gastroenterol. Hepatol.
- Ma (2015), Long non-coding RNA CCAT1 promotes gallbladder cancer development via negative modulation of miRNA-218-5p., Cell Death Dis
- Mizrahi (2015), Colon Cancer Associated Transcript-1 (CCAT1) Expression in Adenocarcinoma of the Stomach., J Cancer
- Ruan (2015), Long non-coding RNA expression profile in atrial fibrillation., Int J Clin Exp Pathol
- Ye (2015), Expression of lncRNA-CCAT1, E-cadherin and N-cadherin in colorectal cancer and its clinical significance., Int J Clin Exp Med
- Zhai (2015), Long noncoding RNA MALAT1 as a putative biomarker of lymph node metastasis: a meta-analysis., Int J Clin Exp Med
- Zhang (2015), Overexpression of long non-coding RNA CCAT1 is a novel biomarker of poor prognosis in patients with breast cancer., Int J Clin Exp Pathol
- Zhou (2015), Identification of the long non-coding RNA H19 in plasma as a novel biomarker for diagnosis of gastric cancer., Sci Rep
- Zhu (2015), CCAT1 promotes hepatocellular carcinoma cell proliferation and invasion., Int J Clin Exp Pathol
- Dryden (2014), Unbiased analysis of potential targets of breast cancer susceptibility loci by Capture Hi-C., Genome Res.
- He (2014), C-Myc-activated long noncoding RNA CCAT1 promotes colon cancer cell proliferation and invasion., Tumour Biol.
- Kam (2014), Detection of a long non-coding RNA (CCAT1) in living cells and human adenocarcinoma of colon tissues using FIT-PNA molecular beacons., Cancer Lett.
- Kim (2014), Long-range interaction and correlation between MYC enhancer and oncogenic long noncoding RNA CARLo-5., Proc. Natl. Acad. Sci. U.S.A.
- Li (2014), Non-coding RNAs and gastric cancer., World J. Gastroenterol.
- Xiang (2014), Human colorectal cancer-specific CCAT1-L lncRNA regulates long-range chromatin interactions at the MYC locus., Cell Res.
- Younger (2014), 'Lnc'-ing enhancers to MYC regulation., Cell Res.
- Alaiyan (2013), Differential expression of colon cancer associated transcript1 (CCAT1) along the colonic adenoma-carcinoma sequence., BMC Cancer
- Liu (2013), Identification of differentially expressed long non-coding RNAs in human ovarian cancer cells with different metastatic potentials., Cancer Biol Med
- Yang (2013), Long noncoding RNA CCAT1, which could be activated by c-Myc, promotes the progression of gastric carcinoma., J. Cancer Res. Clin. Oncol.
- Jin (2011), Human polymorphisms at long non-coding RNAs (lncRNAs) and association with prostate cancer risk., Carcinogenesis