Gene: lnc-GSDMC-34
Basic information
LNCipedia gene ID: lnc-GSDMC-34
Location (hg19): chr8:129646445-130695925
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA_gene
Transcripts: 40
Transcripts
| Transcript ID | Location (hg19) | Length |
|---|---|---|
| lnc-GSDMC-34:1 | chr8:130691381-130695925 | 683 bp |
| lnc-GSDMC-34:10 | chr8:129916678-130587266 | 1147 bp |
| lnc-GSDMC-34:11 | chr8:130363937-130587264 | 1498 bp |
| lnc-GSDMC-34:12 | chr8:130364675-130587264 | 931 bp |
| lnc-GSDMC-34:13 | chr8:130363940-130587264 | 1666 bp |
| lnc-GSDMC-34:14 | chr8:130363940-130587264 | 1649 bp |
| lnc-GSDMC-34:15 | chr8:130363940-130587264 | 1495 bp |
| lnc-GSDMC-34:16 | chr8:130363937-130587262 | 1496 bp |
| lnc-GSDMC-34:17 | chr8:130364675-130587237 | 904 bp |
| lnc-GSDMC-34:18 | chr8:130289013-130560932 | 606 bp |
| lnc-GSDMC-34:19 | chr8:130355787-130560932 | 21533 bp |
| lnc-GSDMC-34:2 | chr8:130639148-130694341 | 1660 bp |
| lnc-GSDMC-34:20 | chr8:130363854-130560932 | 1980 bp |
| lnc-GSDMC-34:21 | chr8:130372875-130560932 | 657 bp |
| lnc-GSDMC-34:22 | chr8:130400300-130560932 | 518 bp |
| lnc-GSDMC-34:23 | chr8:130364905-130365234 | 330 bp |
| lnc-GSDMC-34:24 | chr8:130363940-130365228 | 1289 bp |
| lnc-GSDMC-34:25 | chr8:130228711-130253496 | 1016 bp |
| lnc-GSDMC-34:26 | chr8:130228728-130253496 | 1148 bp |
| lnc-GSDMC-34:27 | chr8:130228713-130253496 | 1163 bp |
| lnc-GSDMC-34:28 | chr8:130031048-130253490 | 797 bp |
| lnc-GSDMC-34:29 | chr8:130031048-130253490 | 879 bp |
| lnc-GSDMC-34:3 | chr8:130598378-130694333 | 1254 bp |
| lnc-GSDMC-34:30 | chr8:130228713-130253490 | 1157 bp |
| lnc-GSDMC-34:31 | chr8:130242274-130253490 | 1066 bp |
| lnc-GSDMC-34:32 | chr8:130228714-130253486 | 1152 bp |
| lnc-GSDMC-34:33 | chr8:130228713-130253486 | 1153 bp |
| lnc-GSDMC-34:34 | chr8:129965125-129978247 | 461 bp |
| lnc-GSDMC-34:35 | chr8:129917019-129978247 | 866 bp |
| lnc-GSDMC-34:36 | chr8:129967006-129978247 | 783 bp |
| lnc-GSDMC-34:37 | chr8:129965123-129978247 | 534 bp |
| lnc-GSDMC-34:38 | chr8:129646445-129978247 | 20097 bp |
| lnc-GSDMC-34:39 | chr8:129934433-129978247 | 16226 bp |
| lnc-GSDMC-34:4 | chr8:130363938-130692485 | 1720 bp |
| lnc-GSDMC-34:40 | chr8:129934433-129978247 | 43815 bp |
| lnc-GSDMC-34:5 | chr8:130363937-130692485 | 1721 bp |
| lnc-GSDMC-34:6 | chr8:130363940-130692485 | 1718 bp |
| lnc-GSDMC-34:7 | chr8:130640937-130692295 | 677 bp |
| lnc-GSDMC-34:8 | chr8:130228696-130587309 | 1288 bp |
| lnc-GSDMC-34:9 | chr8:130003393-130587266 | 1652 bp |
Locus conservation
| Locus conservation? |  |
 |
 |
 |
|---|---|---|---|---|
| lnc-GSDMC-34 | no | no | no | no |
Available literature
- Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res
- Hirano (2015), Long noncoding RNA, CCDC26, controls myeloid leukemia cell growth through regulation of KIT expression., Mol. Cancer
- Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget
- Chinen (2014), 8q24 amplified segments involve novel fusion genes between NSMCE2 and long noncoding RNAs in acute myelogenous leukemia., J Hematol Oncol
- Dryden (2014), Unbiased analysis of potential targets of breast cancer susceptibility loci by Capture Hi-C., Genome Res.
- Tseng (2014), PVT1 dependence in cancer with MYC copy-number increase., Nature
- Enciso-Mora (2013), Deciphering the 8q24.21 association for glioma., Hum. Mol. Genet.
- Jin (2011), Human polymorphisms at long non-coding RNAs (lncRNAs) and association with prostate cancer risk., Carcinogenesis
- Yin (2006), Co-resistance to retinoic acid and TRAIL by insertion mutagenesis into RAM., Oncogene