Gene: lnc-SLC39A11-1
Basic information
LNCipedia gene ID: lnc-SLC39A11-1
Location (hg19): chr17:70319264-70636611
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA_gene
Transcripts: 49
Transcripts
Transcript ID | Location (hg19) | Length |
---|---|---|
lnc-SLC39A11-1:1 | chr17:70594180-70636611 | 2265 bp |
lnc-SLC39A11-1:10 | chr17:70416859-70588804 | 773 bp |
lnc-SLC39A11-1:11 | chr17:70319299-70588494 | 379 bp |
lnc-SLC39A11-1:12 | chr17:70399463-70588479 | 1696 bp |
lnc-SLC39A11-1:13 | chr17:70424409-70466506 | 436 bp |
lnc-SLC39A11-1:14 | chr17:70400663-70441259 | 561 bp |
lnc-SLC39A11-1:15 | chr17:70424113-70427332 | 391 bp |
lnc-SLC39A11-1:16 | chr17:70400780-70427300 | 538 bp |
lnc-SLC39A11-1:18 | chr17:70417970-70419211 | 520 bp |
lnc-SLC39A11-1:19 | chr17:70399469-70419167 | 1731 bp |
lnc-SLC39A11-1:2 | chr17:70427305-70599647 | 467 bp |
lnc-SLC39A11-1:20 | chr17:70400292-70419167 | 908 bp |
lnc-SLC39A11-1:21 | chr17:70400801-70417365 | 475 bp |
lnc-SLC39A11-1:22 | chr17:70400405-70416864 | 577 bp |
lnc-SLC39A11-1:23 | chr17:70379096-70381264 | 757 bp |
lnc-SLC39A11-1:24 | chr17:70336523-70338712 | 788 bp |
lnc-SLC39A11-1:25 | chr17:70320575-70338712 | 974 bp |
lnc-SLC39A11-1:26 | chr17:70320609-70335713 | 409 bp |
lnc-SLC39A11-1:27 | chr17:70319306-70335713 | 227 bp |
lnc-SLC39A11-1:28 | chr17:70320575-70335713 | 544 bp |
lnc-SLC39A11-1:29 | chr17:70320204-70335708 | 657 bp |
lnc-SLC39A11-1:3 | chr17:70380443-70588943 | 1747 bp |
lnc-SLC39A11-1:30 | chr17:70319264-70322090 | 355 bp |
lnc-SLC39A11-1:31 | chr17:70319286-70322073 | 536 bp |
lnc-SLC39A11-1:32 | chr17:70383737-70589706 | 18746 bp |
lnc-SLC39A11-1:33 | chr17:70427268-70588906 | 663 bp |
lnc-SLC39A11-1:34 | chr17:70396860-70588592 | 6904 bp |
lnc-SLC39A11-1:35 | chr17:70549467-70550522 | 624 bp |
lnc-SLC39A11-1:36 | chr17:70319298-70396537 | 1129 bp |
lnc-SLC39A11-1:37 | chr17:70324140-70338712 | 564 bp |
lnc-SLC39A11-1:38 | chr17:70319306-70321619 | 466 bp |
lnc-SLC39A11-1:39 | chr17:70399470-70588939 | 2511 bp |
lnc-SLC39A11-1:4 | chr17:70380443-70588943 | 1716 bp |
lnc-SLC39A11-1:40 | chr17:70399470-70588939 | 2149 bp |
lnc-SLC39A11-1:41 | chr17:70319299-70588943 | 828 bp |
lnc-SLC39A11-1:42 | chr17:70380443-70588943 | 1716 bp |
lnc-SLC39A11-1:43 | chr17:70381421-70588943 | 769 bp |
lnc-SLC39A11-1:44 | chr17:70399463-70588943 | 2160 bp |
lnc-SLC39A11-1:45 | chr17:70399489-70588943 | 2112 bp |
lnc-SLC39A11-1:46 | chr17:70399489-70588943 | 2496 bp |
lnc-SLC39A11-1:47 | chr17:70379340-70419340 | 22298 bp |
lnc-SLC39A11-1:48 | chr17:70400292-70419066 | 807 bp |
lnc-SLC39A11-1:49 | chr17:70417970-70419066 | 375 bp |
lnc-SLC39A11-1:5 | chr17:70380462-70588943 | 1697 bp |
lnc-SLC39A11-1:50 | chr17:70397445-70419066 | 5532 bp |
lnc-SLC39A11-1:6 | chr17:70399463-70588943 | 2257 bp |
lnc-SLC39A11-1:7 | chr17:70399469-70588941 | 1956 bp |
lnc-SLC39A11-1:8 | chr17:70399094-70588931 | 2517 bp |
lnc-SLC39A11-1:9 | chr17:70417081-70588928 | 772 bp |
Locus conservation
Locus conservation? | ||||
---|---|---|---|---|
lnc-SLC39A11-1 | no | no | no | no |
Available literature
- Schmidt (2016), The lncRNA SLNCR1 Mediates Melanoma Invasion through a Conserved SRA1-like Region., Cell Rep
- Sun (2016), Long Intergenic Noncoding RNA 00511 Acts as an Oncogene in Non-small-cell Lung Cancer by Binding to EZH2 and Suppressing p57., Mol Ther Nucleic Acids
- Zheng (2016), Pancreatic cancer risk variant in LINC00673 creates a miR-1231 binding site and interferes with PTPN11 degradation., Nat. Genet.
- Cabanski (2015), Pan-cancer transcriptome analysis reveals long noncoding RNAs with conserved function., RNA Biol
- Morán (2012), Human β cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes., Cell Metab.