Gene: lnc-SLC39A11-1

Basic information

LNCipedia gene ID: lnc-SLC39A11-1 
Location (hg19): chr17:70319264-70636611
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA_gene
Transcripts: 49

Transcripts

Transcript IDLocation (hg19)Length
lnc-SLC39A11-1:1 chr17:70594180-70636611 2265 bp
lnc-SLC39A11-1:10 chr17:70416859-70588804 773 bp
lnc-SLC39A11-1:11 chr17:70319299-70588494 379 bp
lnc-SLC39A11-1:12 chr17:70399463-70588479 1696 bp
lnc-SLC39A11-1:13 chr17:70424409-70466506 436 bp
lnc-SLC39A11-1:14 chr17:70400663-70441259 561 bp
lnc-SLC39A11-1:15 chr17:70424113-70427332 391 bp
lnc-SLC39A11-1:16 chr17:70400780-70427300 538 bp
lnc-SLC39A11-1:18 chr17:70417970-70419211 520 bp
lnc-SLC39A11-1:19 chr17:70399469-70419167 1731 bp
lnc-SLC39A11-1:2 chr17:70427305-70599647 467 bp
lnc-SLC39A11-1:20 chr17:70400292-70419167 908 bp
lnc-SLC39A11-1:21 chr17:70400801-70417365 475 bp
lnc-SLC39A11-1:22 chr17:70400405-70416864 577 bp
lnc-SLC39A11-1:23 chr17:70379096-70381264 757 bp
lnc-SLC39A11-1:24 chr17:70336523-70338712 788 bp
lnc-SLC39A11-1:25 chr17:70320575-70338712 974 bp
lnc-SLC39A11-1:26 chr17:70320609-70335713 409 bp
lnc-SLC39A11-1:27 chr17:70319306-70335713 227 bp
lnc-SLC39A11-1:28 chr17:70320575-70335713 544 bp
lnc-SLC39A11-1:29 chr17:70320204-70335708 657 bp
lnc-SLC39A11-1:3 chr17:70380443-70588943 1747 bp
lnc-SLC39A11-1:30 chr17:70319264-70322090 355 bp
lnc-SLC39A11-1:31 chr17:70319286-70322073 536 bp
lnc-SLC39A11-1:32 chr17:70383737-70589706 18746 bp
lnc-SLC39A11-1:33 chr17:70427268-70588906 663 bp
lnc-SLC39A11-1:34 chr17:70396860-70588592 6904 bp
lnc-SLC39A11-1:35 chr17:70549467-70550522 624 bp
lnc-SLC39A11-1:36 chr17:70319298-70396537 1129 bp
lnc-SLC39A11-1:37 chr17:70324140-70338712 564 bp
lnc-SLC39A11-1:38 chr17:70319306-70321619 466 bp
lnc-SLC39A11-1:39 chr17:70399470-70588939 2511 bp
lnc-SLC39A11-1:4 chr17:70380443-70588943 1716 bp
lnc-SLC39A11-1:40 chr17:70399470-70588939 2149 bp
lnc-SLC39A11-1:41 chr17:70319299-70588943 828 bp
lnc-SLC39A11-1:42 chr17:70380443-70588943 1716 bp
lnc-SLC39A11-1:43 chr17:70381421-70588943 769 bp
lnc-SLC39A11-1:44 chr17:70399463-70588943 2160 bp
lnc-SLC39A11-1:45 chr17:70399489-70588943 2112 bp
lnc-SLC39A11-1:46 chr17:70399489-70588943 2496 bp
lnc-SLC39A11-1:47 chr17:70379340-70419340 22298 bp
lnc-SLC39A11-1:48 chr17:70400292-70419066 807 bp
lnc-SLC39A11-1:49 chr17:70417970-70419066 375 bp
lnc-SLC39A11-1:5 chr17:70380462-70588943 1697 bp
lnc-SLC39A11-1:50 chr17:70397445-70419066 5532 bp
lnc-SLC39A11-1:6 chr17:70399463-70588943 2257 bp
lnc-SLC39A11-1:7 chr17:70399469-70588941 1956 bp
lnc-SLC39A11-1:8 chr17:70399094-70588931 2517 bp
lnc-SLC39A11-1:9 chr17:70417081-70588928 772 bp


Locus conservation

Locus conservation?
lnc-SLC39A11-1 no no no no

Available literature

  1. Schmidt (2016), The lncRNA SLNCR1 Mediates Melanoma Invasion through a Conserved SRA1-like Region., Cell Rep
  2. Sun (2016), Long Intergenic Noncoding RNA 00511 Acts as an Oncogene in Non-small-cell Lung Cancer by Binding to EZH2 and Suppressing p57., Mol Ther Nucleic Acids
  3. Zheng (2016), Pancreatic cancer risk variant in LINC00673 creates a miR-1231 binding site and interferes with PTPN11 degradation., Nat. Genet.
  4. Cabanski (2015), Pan-cancer transcriptome analysis reveals long noncoding RNAs with conserved function., RNA Biol
  5. Morán (2012), Human β cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes., Cell Metab.