Transcript: AATBC:11

Basic information

LNCipedia transcript ID: AATBC:11 
LNCipedia gene ID: AATBC
Location (hg19): chr21:45225641-45230242
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 960 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00028788
Alternative gene names: XLOC_014107; linc-CSTB-3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 20.7935 non-coding 
CPAT coding probability 32.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
AATBC:11 no no no no

Available literature

  1. Zhao (2015), Knockdown of a novel lincRNA AATBC suppresses proliferation and induces apoptosis in bladder cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CSTB-1:6
3.1 lnc-CSTB-1:9
4.0 AATBC:11
4.1 AATBC:11
5.0 AATBC:11
5.1 AATBC:11
5.2 AATBC:11