Transcript: AATBC:17

Basic information

LNCipedia transcript ID: AATBC:17 
LNCipedia gene ID: AATBC
Location (hg19): chr21:45221619-45232376
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5339 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000215458.4|HBMT00000927743.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 20.7935 non-coding 
CPAT coding probability 60.46% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
AATBC:17 yes no no no

Available literature

  1. Zhao (2015), Knockdown of a novel lincRNA AATBC suppresses proliferation and induces apoptosis in bladder cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 AATBC:17
5.0 AATBC:17
5.1 AATBC:17
5.2 AATBC:17