Transcript: AATBC:4

Basic information

LNCipedia transcript ID: AATBC:4 
LNCipedia gene ID: AATBC
Location (hg19): chr21:45225641-45232448
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4596 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00028761
Alternative gene names: XLOC_014107; linc-CSTB-3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 28.644 non-coding 
CPAT coding probability 98.72% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
AATBC:4 no no no no

Available literature

  1. Zhao (2015), Knockdown of a novel lincRNA AATBC suppresses proliferation and induces apoptosis in bladder cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CSTB-1:1
3.1 lnc-CSTB-1:2
4.0 AATBC:4
4.1 AATBC:4
5.0 AATBC:4
5.1 AATBC:4
5.2 AATBC:4