Transcript: AATBC:5

Basic information

LNCipedia transcript ID: AATBC:5 
HGNC Gene Symbol: AATBC    
HGNC Full Gene Name: apoptosis associated transcript in bladder cancer
Ensembl Gene ID: ENSG00000215458
Ensembl Transcript ID: ENST00000400385
RefSeq ID: NR_026961
Location (hg19): chr21:45225639-45232448
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4598 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000400385.2; AP001053.11-002; OTTHUMT00000195677.1; NONHSAT082457; NR_026961; NR_026961.1
Alternative gene names: ENSG00000215458.4; AP001053.11; OTTHUMG00000086882.1; ENSG00000215458.8; AATBC;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 28.644 non-coding 
CPAT coding probability 98.72% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
AATBC:5 no no no no

Available literature

  1. Zhao (2015), Knockdown of a novel lincRNA AATBC suppresses proliferation and induces apoptosis in bladder cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CSTB-1:1
4.0 AATBC:5
4.1 AATBC:5
5.0 AATBC:5
5.1 AATBC:5
5.2 AATBC:5