Transcript: ABCA9-AS1:7

Basic information

LNCipedia transcript ID: ABCA9-AS1:7 
HGNC Gene Symbol: ABCA9-AS1    
HGNC Full Gene Name: ABCA9 antisense RNA 1
Ensembl Gene ID: ENSG00000231749
Ensembl Transcript ID: ENST00000629311
Location (hg19): chr17:67014245-67038925
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 838 bp
Exons: 5
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000629311.1
Alternative gene names: ENSG00000231749.3; ABCA9-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 12.7041 non-coding 
CPAT coding probability 0.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ABCA9-AS1:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 ABCA9-AS1:7
4.1 ABCA9-AS1:7
5.0 ABCA9-AS1:7
5.1 ABCA9-AS1:7
5.2 ABCA9-AS1:7