Transcript: ABCC5-AS1:1

Basic information

LNCipedia transcript ID: ABCC5-AS1:1 
HGNC Gene Symbol: ABCC5-AS1    
HGNC Full Gene Name: ABCC5 antisense RNA 1
Ensembl Gene ID: ENSG00000223882
Ensembl Transcript ID: ENST00000422946
RefSeq ID: NR_046570
Location (hg19): chr3:183724126-183729207
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 469 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000422946.1; ABCC5-AS1-001; OTTHUMT00000346349.1; NONHSAT093673; NR_046570; NR_046570.1
Alternative gene names: ENSG00000223882.1; ABCC5-AS1; OTTHUMG00000156870.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -647.4238 non-coding 
CPAT coding probability 1.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ABCC5-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HTR3D-1:1
4.0 ABCC5-AS1:1
4.1 ABCC5-AS1:1
5.0 ABCC5-AS1:1
5.1 ABCC5-AS1:1
5.2 ABCC5-AS1:1