Transcript: ACTA2-AS1:5

Basic information

LNCipedia transcript ID: ACTA2-AS1:5 
LNCipedia gene ID: ACTA2-AS1
Location (hg19): chr10:90692780-90693638
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 859 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT015483
Alternative gene names: uc001kfo.1; ZXF1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -152.9579 non-coding 
CPAT coding probability 29.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ACTA2-AS1:5 yes no no no

Available literature

  1. Zhang (2014), Enhanced expression of long non-coding RNA ZXF1 promoted the invasion and metastasis in lung adenocarcinoma., Biomed. Pharmacother.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAS-3:4
4.0 ACTA2-AS1:5
4.1 ACTA2-AS1:5
5.0 ACTA2-AS1:5
5.1 ACTA2-AS1:5
5.2 ACTA2-AS1:5