Transcript: ACTN1-AS1:3

Basic information

LNCipedia transcript ID: ACTN1-AS1:3 
LNCipedia gene ID: ACTN1-AS1
Location (hg19): chr14:69446758-69448270
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 475 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000553944.1; ACTN1-AS1-001; OTTHUMT00000414805.1
Alternative gene names: ENSG00000259062.1; ACTN1-AS1; OTTHUMG00000171698.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -133.4922 non-coding 
CPAT coding probability 1.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ACTN1-AS1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EXD2-1:3
4.0 ACTN1-AS1:3
4.1 ACTN1-AS1:3
5.0 ACTN1-AS1:3
5.1 ACTN1-AS1:3
5.2 ACTN1-AS1:3