Transcript: ADAMTS9-AS1:27

Basic information

LNCipedia transcript ID: ADAMTS9-AS1:27 
LNCipedia gene ID: ADAMTS9-AS1
Location (hg19): chr3:64568499-64572573
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 770 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000471990.1; ADAMTS9-AS1-003; OTTHUMT00000351903.1
Alternative gene names: ENSG00000241158.1; ADAMTS9-AS1; OTTHUMG00000158723.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -197.7511 non-coding 
CPAT coding probability 0.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ADAMTS9-AS1:27 yes no no no

Available literature

  1. Wang (2016), LncRNAs expression profiling in normal ovary, benign ovarian cyst and malignant epithelial ovarian cancer., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATXN7-7:7
4.0 ADAMTS9-AS1:27
4.1 ADAMTS9-AS1:27
5.0 ADAMTS9-AS1:27
5.1 ADAMTS9-AS1:27
5.2 ADAMTS9-AS1:27