Transcript: ADAMTS9-AS2:12

Basic information

LNCipedia transcript ID: ADAMTS9-AS2:12 
LNCipedia gene ID: ADAMTS9-AS2
Location (hg19): chr3:65044992-65050250
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5259 bp
Exons: 1
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT090279; FPKM1_group_21363_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.2627 non-coding 
CPAT coding probability 1.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ADAMTS9-AS2:12 no no no no

Available literature

  1. Liu (2018), Upregulated lncRNA ADAMTS9-AS2 suppresses progression of lung cancer through inhibition of miR-223-3p and promotion of TGFBR3., IUBMB Life
  2. Yao (2014), A new tumor suppressor LncRNA ADAMTS9-AS2 is regulated by DNMT1 and inhibits migration of glioma cells., Tumour Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATXN7-8:12
4.0 ADAMTS9-AS2:12
4.1 ADAMTS9-AS2:12
5.0 ADAMTS9-AS2:12
5.1 ADAMTS9-AS2:12
5.2 ADAMTS9-AS2:12