Transcript: ADAMTS9-AS2:2

Basic information

LNCipedia transcript ID: ADAMTS9-AS2:2 
LNCipedia gene ID: ADAMTS9-AS2
RefSeq ID: NR_038264
Location (hg19): chr3:64670546-64997143
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2228 bp
Exons: 6
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT090262; NR_038264; NR_038264.1
Alternative gene names: ; ADAMTS9-AS2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.0059 non-coding 
CPAT coding probability 22.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ADAMTS9-AS2:2 yes no no no

Available literature

  1. Liu (2018), Upregulated lncRNA ADAMTS9-AS2 suppresses progression of lung cancer through inhibition of miR-223-3p and promotion of TGFBR3., IUBMB Life
  2. Yao (2014), A new tumor suppressor LncRNA ADAMTS9-AS2 is regulated by DNMT1 and inhibits migration of glioma cells., Tumour Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATXN7-8:6
4.0 ADAMTS9-AS2:2
4.1 ADAMTS9-AS2:2
5.0 ADAMTS9-AS2:2
5.1 ADAMTS9-AS2:2
5.2 ADAMTS9-AS2:2