Transcript: AFDN-DT:12

Basic information

LNCipedia transcript ID: AFDN-DT:12 
LNCipedia gene ID: AFDN-DT
RefSeq ID: NR_027906
Location (hg19): chr6:168224570-168227476
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2311 bp
Exons: 2
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00011145; NONHSAT116113; NR_027906; NR_027906.1
Alternative gene names: XLOC_005925; linc-TCP10-5; HGC6.4; dJ431P23.3; MLLT4-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 28.7849 non-coding 
CPAT coding probability 96.28% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
AFDN-DT:12 no no no no

Available literature

  1. Minaguchi (1999), Complete DNA sequence and characterization of a 330-kb VNTR-rich region on chromosome 6q27 that is commonly deleted in ovarian cancer., DNA Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C6orf123-1:1
3.1 lnc-C6orf123-1:1
4.0 MLLT4-AS1:1
4.1 MLLT4-AS1:1
5.0 MLLT4-AS1:1
5.1 AFDN-DT:2
5.2 AFDN-DT:12