Transcript: AFF1-AS1:15

Basic information

LNCipedia transcript ID: AFF1-AS1:15 
HGNC Gene Symbol: AFF1-AS1    
HGNC Full Gene Name: AFF1 antisense RNA 1
RefSeq ID: NR_038841
Location (hg19): chr4:87846046-87856002
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1945 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT097291; NR_038841; NR_038841.1
Alternative gene names: LOC100506746


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.6416 non-coding 
CPAT coding probability 3.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
AFF1-AS1:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC10A6-2:5
4.0 lnc-C4orf36-2:5
4.1 lnc-C4orf36-2:5
5.0 lnc-C4orf36-2:5
5.1 AFF1-AS1:8
5.2 AFF1-AS1:15