Transcript: AFF1-AS1:16

Basic information

LNCipedia transcript ID: AFF1-AS1:16 
LNCipedia gene ID: AFF1-AS1
Ensembl Gene ID: ENSG00000284968
Ensembl Transcript ID: ENST00000509262
Location (hg19): chr4:87854317-87855694
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 434 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT097292; ENST00000509262.1
Alternative gene names: ENSG00000284968.1; AC093827.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -111.1085 non-coding 
CPAT coding probability 0.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
AFF1-AS1:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC10A6-2:6
4.0 lnc-C4orf36-2:6
4.1 lnc-C4orf36-2:6
5.0 lnc-C4orf36-2:6
5.1 AFF1-AS1:9
5.2 AFF1-AS1:16