Transcript: ARHGEF7-AS2:1

Basic information

LNCipedia transcript ID: ARHGEF7-AS2:1 
LNCipedia gene ID: ARHGEF7-AS2
Location (hg19): chr13:111767766-111768922
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 493 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000422836; ENST00000422836.1; ARHGEF7-AS2-002; OTTHUMT00000045796.1; NONHSAT035203
Alternative gene names: ENSG00000235875; ARHGEF7-AS2; ENSG00000235875.1; OTTHUMG00000017353.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 48.32% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
ARHGEF7-AS2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANKRD10-2:1
3.1 lnc-ANKRD10-2:1
4.0 ARHGEF7-AS2:1
4.1 ARHGEF7-AS2:1
5.0 ARHGEF7-AS2:1
5.1 ARHGEF7-AS2:1
5.2 ARHGEF7-AS2:1