Transcript: ARHGEF7-AS2:2

Basic information

LNCipedia transcript ID: ARHGEF7-AS2:2 
LNCipedia gene ID: ARHGEF7-AS2
Location (hg19): chr13:111766621-111768025
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 777 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000425094; ENST00000425094.1; ARHGEF7-AS2-001; OTTHUMT00000045795.1
Alternative gene names: ENSG00000235875; ARHGEF7-AS2; ENSG00000235875.1; OTTHUMG00000017353.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.1581 non-coding 
CPAT coding probability 6.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ARHGEF7-AS2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANKRD10-2:2
3.1 lnc-ANKRD10-2:2
4.0 ARHGEF7-AS2:2
4.1 ARHGEF7-AS2:2
5.0 ARHGEF7-AS2:2
5.1 ARHGEF7-AS2:2
5.2 ARHGEF7-AS2:2