Transcript: ARLNC1:10

Basic information

LNCipedia transcript ID: ARLNC1:10 
LNCipedia gene ID: ARLNC1
Location (hg19): chr16:80862640-80926493
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2211 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00024276
Alternative gene names: XLOC_012021; linc-CDYL2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.2297 non-coding 
CPAT coding probability 13.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ARLNC1:10 no no no no

Available literature

  1. Zhang (2018), Analysis of the androgen receptor-regulated lncRNA landscape identifies a role for ARLNC1 in prostate cancer progression., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDYL2-3:1
3.1 lnc-CDYL2-4:1
4.0 lnc-CDYL2-4:1
4.1 lnc-CDYL2-4:1
5.0 lnc-CDYL2-4:1
5.1 ARLNC1:2
5.2 ARLNC1:10