Transcript: ATP11A-AS1:5

Basic information

LNCipedia transcript ID: ATP11A-AS1:5 
HGNC Gene Symbol: ATP11A-AS1    
HGNC Full Gene Name: ATP11A antisense RNA 1
Ensembl Gene ID: ENSG00000232684
Ensembl Transcript ID: ENST00000446442
Location (hg19): chr13:113399763-113409007
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2192 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000446442.1; ATP11A-AS1-001; OTTHUMT00000045833.2; NONHSAT035289
Alternative gene names: ENSG00000232684.1; ATP11A-AS1; OTTHUMG00000017370.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 20.3417 non-coding 
CPAT coding probability 14.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ATP11A-AS1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TUBGCP3-3:1
4.0 ATP11A-AS1:5
4.1 ATP11A-AS1:5
5.0 ATP11A-AS1:5
5.1 ATP11A-AS1:5
5.2 ATP11A-AS1:5