Transcript: BFSP2-AS1:1

Basic information

LNCipedia transcript ID: BFSP2-AS1:1 
LNCipedia gene ID: BFSP2-AS1
Location (hg19): chr3:133145180-133175207
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1754 bp
Exons: 3
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1017:3
Alternative gene names: MGC2848


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -27.1708 non-coding 
CPAT coding probability 0.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
BFSP2-AS1:1 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 BFSP2-AS1:1
4.1 BFSP2-AS1:1
5.0 BFSP2-AS1:1
5.1 BFSP2-AS1:1
5.2 BFSP2-AS1:1