Transcript: BFSP2-AS1:9

Basic information

LNCipedia transcript ID: BFSP2-AS1:9 
LNCipedia gene ID: BFSP2-AS1
Location (hg19): chr3:133103668-133209953
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 236 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000249993.1|ENCT00000309136.1
Alternative gene names: MGC2848


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 1.1834 non-coding 
CPAT coding probability 2.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
BFSP2-AS1:9 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 BFSP2-AS1:9
5.0 BFSP2-AS1:9
5.1 BFSP2-AS1:9
5.2 BFSP2-AS1:9