Transcript: BGLT3:2

Basic information

LNCipedia transcript ID: BGLT3:2 
HGNC Gene Symbol: BGLT3    
HGNC Full Gene Name: beta globin locus transcript 3
Ensembl Gene ID: ENSG00000260629
Ensembl Transcript ID: ENST00000564523
Location (hg19): chr11:5265784-5266776
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 993 bp
Exons: 1
Sources: Refseq - Dec 2014; Ensembl release 92 - Apr 2018
Alternative transcript names: NR_121648; ENST00000564523.2
Alternative gene names: LINC01083; BGL3; lncRNA-BGL3; ENSG00000260629.2; BGLT3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -95.4558 non-coding 
CPAT coding probability 0.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
BGLT3:2 no no no no

Available literature

  1. Guo (2015), A long noncoding RNA critically regulates Bcr-Abl-mediated cellular transformation by acting as a competitive endogenous RNA., Oncogene
  2. Chan (2013), A signature motif mediating selective interactions of BCL11A with the NR2E/F subfamily of orphan nuclear receptors., Nucleic Acids Res.
  3. Kiefer (2011), Distinct Ldb1/NLI complexes orchestrate γ-globin repression and reactivation through ETO2 in human adult erythroid cells., Blood


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HBG1-1:2
4.0 BGLT3:2
4.1 BGLT3:2
5.0 BGLT3:2
5.1 BGLT3:2
5.2 BGLT3:2