Transcript: BIN3-IT1:3

Basic information

LNCipedia transcript ID: BIN3-IT1:3 
HGNC Gene Symbol: BIN3-IT1    
HGNC Full Gene Name: BIN3 intronic transcript 1
RefSeq ID: NR_027715
Location (hg19): chr8:22497884-22499722
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1839 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT125501; NR_027715; NR_027715.1
Alternative gene names: BIN3-IT1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.2861 non-coding 
CPAT coding probability 12.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
BIN3-IT1:3 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-582J16.5.1-5:1
4.0 lnc-RP11-582J16.5.1-5:1
4.1 lnc-RP11-582J16.5.1-5:1
5.0 lnc-RP11-582J16.5.1-5:1
5.1 BIN3-IT1:2
5.2 BIN3-IT1:3