Transcript: BLACAT1:9

Basic information

LNCipedia transcript ID: BLACAT1:9 
LNCipedia gene ID: BLACAT1
RefSeq ID: NR_103783
Location (hg19): chr1:205404014-205425214
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2616 bp
Exons: 2
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT008995; NR_103783; NR_103783.1
Alternative gene names: BLACAT1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -97.6225 non-coding 
CPAT coding probability 6.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
BLACAT1:9 no no no no

Available literature

  1. He (2013), linc-UBC1 physically associates with polycomb repressive complex 2 (PRC2) and acts as a negative prognostic factor for lymph node metastasis and survival in bladder cancer., Biochim. Biophys. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LEMD1-1:1
4.0 lnc-LEMD1-1:1
4.1 lnc-LEMD1-1:1
5.0 lnc-LEMD1-1:1
5.1 BLACAT1:2
5.2 BLACAT1:9