Transcript: BOK-AS1:8

Basic information

LNCipedia transcript ID: BOK-AS1:8 
LNCipedia gene ID: BOK-AS1
Location (hg19): chr2:242486216-242489374
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 302 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00005366; NONHSAT077948
Alternative gene names: XLOC_002552; linc-STK25; NCRNA00151; NAToB


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.51 non-coding 
CPAT coding probability 4.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
BOK-AS1:8 no no no no

Available literature

  1. Zhang (2009), A natural antisense transcript, BOKAS, regulates the pro-apoptotic activity of human Bok., Int. J. Oncol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-THAP4-1:4
3.1 lnc-THAP4-1:5
4.0 BOK-AS1:8
4.1 BOK-AS1:8
5.0 BOK-AS1:8
5.1 BOK-AS1:8
5.2 BOK-AS1:8