Transcript: BPESC1:1

Basic information

LNCipedia transcript ID: BPESC1:1 
LNCipedia gene ID: BPESC1
RefSeq ID: NR_026783
Location (hg19): chr3:138823027-138844009
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3518 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000418282.1; BPESC1-001; OTTHUMT00000280431.1; NONHSAT092348; NR_026783.3
Alternative gene names: ENSG00000232416.2; BPESC1; OTTHUMG00000141266.1; NCRNA00187


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -110.7317 non-coding 
CPAT coding probability 77.04% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
BPESC1:1 yes no no no

Available literature

  1. De Baere (2000), Identification of BPESC1, a novel gene disrupted by a balanced chromosomal translocation, t(3;4)(q23;p15.2), in a patient with BPES., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C3orf72-1:1
4.0 BPESC1:1
4.1 BPESC1:1
5.0 BPESC1:1
5.1 BPESC1:1
5.2 BPESC1:1