Transcript: BPESC1:2

Basic information

LNCipedia transcript ID: BPESC1:2 
LNCipedia gene ID: BPESC1
Location (hg19): chr3:138823027-138844005
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3514 bp
Exons: 3
Sources: Refseq - Dec 2014
Alternative transcript names: NR_026783
Alternative gene names: NCRNA00187


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -110.7317 non-coding 
CPAT coding probability 77.04% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
BPESC1:2 yes no no no

Available literature

  1. De Baere (2000), Identification of BPESC1, a novel gene disrupted by a balanced chromosomal translocation, t(3;4)(q23;p15.2), in a patient with BPES., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C3orf72-1:2
4.0 BPESC1:2
4.1 BPESC1:2
5.0 BPESC1:2
5.1 BPESC1:2
5.2 BPESC1:2