Transcript: BPESC1:3

Basic information

LNCipedia transcript ID: BPESC1:3 
HGNC Gene Symbol: BPESC1    
HGNC Full Gene Name: blepharophimosis, epicanthus inversus and ptosis, candidate 1
Ensembl Gene ID: ENSG00000232416
Ensembl Transcript ID: ENST00000418282
Location (hg19): chr3:138823027-138844013
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3522 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000418282.2
Alternative gene names: ENSG00000232416.3; BPESC1; NCRNA00187


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -110.7317 non-coding 
CPAT coding probability 77.03% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
BPESC1:3 yes no no no

Available literature

  1. De Baere (2000), Identification of BPESC1, a novel gene disrupted by a balanced chromosomal translocation, t(3;4)(q23;p15.2), in a patient with BPES., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 BPESC1:3
4.1 BPESC1:3
5.0 BPESC1:3
5.1 BPESC1:3
5.2 BPESC1:3