Transcript: BTG3-AS1:13

Basic information

LNCipedia transcript ID: BTG3-AS1:13 
LNCipedia gene ID: BTG3-AS1
Location (hg19): chr21:18984063-19008584
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3618 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000055615.1|MICT00000223865.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -28.7427 non-coding 
CPAT coding probability 0.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
BTG3-AS1:13 yes no no no

Available literature

  1. Taniue (2016), ASBEL-TCF3 complex is required for the tumorigenicity of colorectal cancer cells., Proc. Natl. Acad. Sci. U.S.A.
  2. Yanagida (2013), ASBEL, an ANA/BTG3 antisense transcript required for tumorigenicity of ovarian carcinoma., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CXADR-4:7
5.0 lnc-CXADR-4:7
5.1 BTG3-AS1:5
5.2 BTG3-AS1:13